Hb_001545_020

Information

Type -
Description -
Location Contig1545: 19446-23767
Sequence    

Annotation

kegg
ID cic:CICLE_v10007907mg
description hypothetical protein
nr
ID XP_011011254.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID V4UMJ0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007907mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_020 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
2 Hb_004137_040 0.0735144433 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
3 Hb_000028_190 0.0766806595 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
4 Hb_005762_010 0.0768962153 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
5 Hb_004525_090 0.0797435097 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
6 Hb_000483_450 0.0800393992 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
7 Hb_004202_020 0.0889576616 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001674_010 0.0894751187 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
9 Hb_008054_030 0.0898858442 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
10 Hb_002221_060 0.0915482059 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
11 Hb_000103_200 0.0927742865 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_003339_010 0.0932508215 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
13 Hb_000230_300 0.0934025749 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
14 Hb_000103_450 0.0936657931 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
15 Hb_000392_110 0.0942409413 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_001032_020 0.0946096736 - - ankyrin repeat protein [Bruguiera gymnorhiza]
17 Hb_003376_020 0.0977469344 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000003_380 0.0977621207 - - conserved hypothetical protein [Ricinus communis]
19 Hb_017434_010 0.0988615497 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
20 Hb_004223_060 0.09934954 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]

Gene co-expression network

sample Hb_001545_020 Hb_001545_020 Hb_004137_040 Hb_004137_040 Hb_001545_020--Hb_004137_040 Hb_000028_190 Hb_000028_190 Hb_001545_020--Hb_000028_190 Hb_005762_010 Hb_005762_010 Hb_001545_020--Hb_005762_010 Hb_004525_090 Hb_004525_090 Hb_001545_020--Hb_004525_090 Hb_000483_450 Hb_000483_450 Hb_001545_020--Hb_000483_450 Hb_004202_020 Hb_004202_020 Hb_001545_020--Hb_004202_020 Hb_004137_040--Hb_000028_190 Hb_004137_040--Hb_000483_450 Hb_002221_060 Hb_002221_060 Hb_004137_040--Hb_002221_060 Hb_000928_030 Hb_000928_030 Hb_004137_040--Hb_000928_030 Hb_000230_300 Hb_000230_300 Hb_004137_040--Hb_000230_300 Hb_000103_200 Hb_000103_200 Hb_004137_040--Hb_000103_200 Hb_002150_090 Hb_002150_090 Hb_000028_190--Hb_002150_090 Hb_000028_190--Hb_000483_450 Hb_001674_010 Hb_001674_010 Hb_000028_190--Hb_001674_010 Hb_008054_030 Hb_008054_030 Hb_000028_190--Hb_008054_030 Hb_000028_190--Hb_000928_030 Hb_003339_010 Hb_003339_010 Hb_005762_010--Hb_003339_010 Hb_005762_010--Hb_000230_300 Hb_005762_010--Hb_008054_030 Hb_005762_010--Hb_000103_200 Hb_009023_010 Hb_009023_010 Hb_005762_010--Hb_009023_010 Hb_005762_010--Hb_004137_040 Hb_004525_090--Hb_002221_060 Hb_000003_380 Hb_000003_380 Hb_004525_090--Hb_000003_380 Hb_010883_170 Hb_010883_170 Hb_004525_090--Hb_010883_170 Hb_004525_090--Hb_000230_300 Hb_003376_020 Hb_003376_020 Hb_004525_090--Hb_003376_020 Hb_000483_450--Hb_004202_020 Hb_000483_450--Hb_002221_060 Hb_003894_110 Hb_003894_110 Hb_000483_450--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_000483_450--Hb_000392_110 Hb_001047_090 Hb_001047_090 Hb_004202_020--Hb_001047_090 Hb_040852_010 Hb_040852_010 Hb_004202_020--Hb_040852_010 Hb_004202_020--Hb_003894_110 Hb_004202_020--Hb_000392_110 Hb_004202_020--Hb_003376_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0323359 0.293635 0.447058 0.00980885 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00696728 0.259198

CAGE analysis