Hb_003878_020

Information

Type -
Description -
Location Contig3878: 23511-29003
Sequence    

Annotation

kegg
ID rcu:RCOM_0612490
description Epidermis-specific secreted glycoprotein EP1 precursor, putative
nr
ID XP_002525645.1
description Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
swissprot
ID Q39688
description Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1
trembl
ID B9SI26
description Epidermis-specific secreted glycoprotein EP1, putative OS=Ricinus communis GN=RCOM_0612490 PE=4 SV=1
Gene Ontology
ID GO:0048544
description epidermis-specific secreted glycoprotein ep1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38889: 23345-24485 , PASA_asmbl_38890: 27437-28977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_020 0.0 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
2 Hb_003050_170 0.1254205184 - - conserved hypothetical protein [Ricinus communis]
3 Hb_185830_090 0.1339330845 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001989_040 0.14628488 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
5 Hb_096878_010 0.1497732283 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
6 Hb_000509_090 0.151481059 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_000111_120 0.1558651065 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
8 Hb_000635_190 0.1571744806 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
9 Hb_001005_170 0.167054281 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
10 Hb_008725_030 0.17097538 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003712_010 0.1710051731 - - protein binding protein, putative [Ricinus communis]
12 Hb_004544_010 0.1737396158 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
13 Hb_006153_010 0.1748127783 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
14 Hb_133508_020 0.1753498878 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
15 Hb_002973_070 0.1759207792 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
16 Hb_115445_010 0.1769594366 - - -
17 Hb_000007_380 0.1820508892 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
18 Hb_006721_060 0.183586715 - - RnaseH (mitochondrion) [Malus domestica]
19 Hb_055147_020 0.1839357682 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
20 Hb_004785_160 0.1851314394 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]

Gene co-expression network

sample Hb_003878_020 Hb_003878_020 Hb_003050_170 Hb_003050_170 Hb_003878_020--Hb_003050_170 Hb_185830_090 Hb_185830_090 Hb_003878_020--Hb_185830_090 Hb_001989_040 Hb_001989_040 Hb_003878_020--Hb_001989_040 Hb_096878_010 Hb_096878_010 Hb_003878_020--Hb_096878_010 Hb_000509_090 Hb_000509_090 Hb_003878_020--Hb_000509_090 Hb_000111_120 Hb_000111_120 Hb_003878_020--Hb_000111_120 Hb_000635_190 Hb_000635_190 Hb_003050_170--Hb_000635_190 Hb_003050_170--Hb_185830_090 Hb_003050_170--Hb_096878_010 Hb_006721_060 Hb_006721_060 Hb_003050_170--Hb_006721_060 Hb_008725_030 Hb_008725_030 Hb_003050_170--Hb_008725_030 Hb_003968_010 Hb_003968_010 Hb_003050_170--Hb_003968_010 Hb_185830_090--Hb_096878_010 Hb_185830_090--Hb_000635_190 Hb_004154_010 Hb_004154_010 Hb_185830_090--Hb_004154_010 Hb_133508_020 Hb_133508_020 Hb_185830_090--Hb_133508_020 Hb_185830_090--Hb_006721_060 Hb_001989_040--Hb_000509_090 Hb_001989_040--Hb_000111_120 Hb_008806_040 Hb_008806_040 Hb_001989_040--Hb_008806_040 Hb_002774_180 Hb_002774_180 Hb_001989_040--Hb_002774_180 Hb_010164_020 Hb_010164_020 Hb_001989_040--Hb_010164_020 Hb_004631_100 Hb_004631_100 Hb_001989_040--Hb_004631_100 Hb_096878_010--Hb_000635_190 Hb_096878_010--Hb_006721_060 Hb_000172_310 Hb_000172_310 Hb_096878_010--Hb_000172_310 Hb_096878_010--Hb_133508_020 Hb_000509_090--Hb_000111_120 Hb_000509_090--Hb_004631_100 Hb_000509_090--Hb_010164_020 Hb_000509_090--Hb_133508_020 Hb_000509_090--Hb_002774_180 Hb_000111_120--Hb_004631_100 Hb_000111_120--Hb_010164_020 Hb_000631_100 Hb_000631_100 Hb_000111_120--Hb_000631_100 Hb_001776_070 Hb_001776_070 Hb_000111_120--Hb_001776_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.9102 3.95677 3.19816 0.109911 0.0138079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0518568 0 0.0518821 1.64177 0

CAGE analysis