Hb_002027_330

Information

Type -
Description -
Location Contig2027: 199349-201460
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_330 0.0 - - -
2 Hb_002687_050 0.1673961457 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
3 Hb_008725_200 0.1678218323 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
4 Hb_000127_090 0.1848465336 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000185_200 0.1861633902 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
6 Hb_001310_070 0.1877997272 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
7 Hb_003919_010 0.1909258988 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_002368_040 0.2057177381 - - hypothetical protein PRUPE_ppa019172mg [Prunus persica]
9 Hb_004117_180 0.2113145017 - - -
10 Hb_000120_190 0.2117925571 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
11 Hb_106005_010 0.215683458 - - EG5651 [Manihot esculenta]
12 Hb_012725_090 0.2188265007 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
13 Hb_002671_080 0.2193416773 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
14 Hb_007317_060 0.2217568542 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
15 Hb_115919_010 0.2218845135 - - unknown [Lotus japonicus]
16 Hb_121236_010 0.2219750824 - - geranyl-diphosphate synthase [Hevea brasiliensis]
17 Hb_000032_540 0.2221188388 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
18 Hb_023226_010 0.2227501079 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
19 Hb_013405_040 0.2229814627 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005271_150 0.2234225402 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]

Gene co-expression network

sample Hb_002027_330 Hb_002027_330 Hb_002687_050 Hb_002687_050 Hb_002027_330--Hb_002687_050 Hb_008725_200 Hb_008725_200 Hb_002027_330--Hb_008725_200 Hb_000127_090 Hb_000127_090 Hb_002027_330--Hb_000127_090 Hb_000185_200 Hb_000185_200 Hb_002027_330--Hb_000185_200 Hb_001310_070 Hb_001310_070 Hb_002027_330--Hb_001310_070 Hb_003919_010 Hb_003919_010 Hb_002027_330--Hb_003919_010 Hb_002687_050--Hb_008725_200 Hb_103873_010 Hb_103873_010 Hb_002687_050--Hb_103873_010 Hb_134789_010 Hb_134789_010 Hb_002687_050--Hb_134789_010 Hb_006602_010 Hb_006602_010 Hb_002687_050--Hb_006602_010 Hb_004735_010 Hb_004735_010 Hb_002687_050--Hb_004735_010 Hb_006198_050 Hb_006198_050 Hb_002687_050--Hb_006198_050 Hb_008725_200--Hb_134789_010 Hb_033448_010 Hb_033448_010 Hb_008725_200--Hb_033448_010 Hb_000032_540 Hb_000032_540 Hb_008725_200--Hb_000032_540 Hb_049415_020 Hb_049415_020 Hb_008725_200--Hb_049415_020 Hb_000144_090 Hb_000144_090 Hb_008725_200--Hb_000144_090 Hb_008221_110 Hb_008221_110 Hb_000127_090--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_000127_090--Hb_175976_010 Hb_166480_010 Hb_166480_010 Hb_000127_090--Hb_166480_010 Hb_000258_030 Hb_000258_030 Hb_000127_090--Hb_000258_030 Hb_106005_010 Hb_106005_010 Hb_000127_090--Hb_106005_010 Hb_000120_190 Hb_000120_190 Hb_000127_090--Hb_000120_190 Hb_026247_030 Hb_026247_030 Hb_000185_200--Hb_026247_030 Hb_005167_040 Hb_005167_040 Hb_000185_200--Hb_005167_040 Hb_000185_200--Hb_003919_010 Hb_001696_030 Hb_001696_030 Hb_000185_200--Hb_001696_030 Hb_000185_120 Hb_000185_120 Hb_000185_200--Hb_000185_120 Hb_007766_010 Hb_007766_010 Hb_000185_200--Hb_007766_010 Hb_000122_030 Hb_000122_030 Hb_001310_070--Hb_000122_030 Hb_001310_070--Hb_008221_110 Hb_001057_050 Hb_001057_050 Hb_001310_070--Hb_001057_050 Hb_001310_070--Hb_008725_200 Hb_001310_070--Hb_000127_090 Hb_102156_010 Hb_102156_010 Hb_001310_070--Hb_102156_010 Hb_000948_190 Hb_000948_190 Hb_003919_010--Hb_000948_190 Hb_000684_230 Hb_000684_230 Hb_003919_010--Hb_000684_230 Hb_000771_100 Hb_000771_100 Hb_003919_010--Hb_000771_100 Hb_023226_010 Hb_023226_010 Hb_003919_010--Hb_023226_010 Hb_000080_060 Hb_000080_060 Hb_003919_010--Hb_000080_060 Hb_003919_010--Hb_000144_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52612 0 0.226719 1.80359 0.723974 5.84984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15811 2.37339 2.94536 0.146534 0

CAGE analysis