Hb_000858_040

Information

Type -
Description -
Location Contig858: 93774-101842
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P10401
description Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000858_040 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_000261_270 0.1413993621 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
3 Hb_002450_160 0.1614789873 - - PREDICTED: protein 108 [Jatropha curcas]
4 Hb_009730_010 0.2459515453 - - -
5 Hb_001882_140 0.3020819589 - - -
6 Hb_001146_090 0.3113858542 - - valacyclovir hydrolase, putative [Ricinus communis]
7 Hb_002235_090 0.3117727814 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
8 Hb_021650_050 0.3402748747 - - hypothetical protein RCOM_0852210 [Ricinus communis]
9 Hb_069877_010 0.3477164709 - - chaperone protein DNAj, putative [Ricinus communis]
10 Hb_000429_060 0.3477638949 - - conserved hypothetical protein [Ricinus communis]
11 Hb_135811_030 0.3478325264 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_113444_010 0.348620906 - - -
13 Hb_001959_230 0.3493716098 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
14 Hb_174245_020 0.3518031105 - - -
15 Hb_086922_010 0.3587283353 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
16 Hb_007632_150 0.363038273 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001761_110 0.3652481185 - - Contains similarity to Cf-2.2 gene gb
18 Hb_131101_010 0.3665191815 - - -
19 Hb_014720_060 0.3712789619 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
20 Hb_000441_010 0.3715162051 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000858_040 Hb_000858_040 Hb_000261_270 Hb_000261_270 Hb_000858_040--Hb_000261_270 Hb_002450_160 Hb_002450_160 Hb_000858_040--Hb_002450_160 Hb_009730_010 Hb_009730_010 Hb_000858_040--Hb_009730_010 Hb_001882_140 Hb_001882_140 Hb_000858_040--Hb_001882_140 Hb_001146_090 Hb_001146_090 Hb_000858_040--Hb_001146_090 Hb_002235_090 Hb_002235_090 Hb_000858_040--Hb_002235_090 Hb_000261_270--Hb_009730_010 Hb_000261_270--Hb_002235_090 Hb_000261_270--Hb_002450_160 Hb_000261_270--Hb_001882_140 Hb_000261_270--Hb_001146_090 Hb_007632_150 Hb_007632_150 Hb_002450_160--Hb_007632_150 Hb_001049_080 Hb_001049_080 Hb_002450_160--Hb_001049_080 Hb_086922_010 Hb_086922_010 Hb_002450_160--Hb_086922_010 Hb_000392_200 Hb_000392_200 Hb_002450_160--Hb_000392_200 Hb_009730_010--Hb_002235_090 Hb_009730_010--Hb_001882_140 Hb_030545_040 Hb_030545_040 Hb_009730_010--Hb_030545_040 Hb_047735_010 Hb_047735_010 Hb_009730_010--Hb_047735_010 Hb_001882_140--Hb_002235_090 Hb_000022_210 Hb_000022_210 Hb_001882_140--Hb_000022_210 Hb_009398_010 Hb_009398_010 Hb_001882_140--Hb_009398_010 Hb_002289_030 Hb_002289_030 Hb_001882_140--Hb_002289_030 Hb_005316_010 Hb_005316_010 Hb_001882_140--Hb_005316_010 Hb_005204_060 Hb_005204_060 Hb_001882_140--Hb_005204_060 Hb_002843_090 Hb_002843_090 Hb_001146_090--Hb_002843_090 Hb_000364_070 Hb_000364_070 Hb_001146_090--Hb_000364_070 Hb_059301_010 Hb_059301_010 Hb_001146_090--Hb_059301_010 Hb_021650_050 Hb_021650_050 Hb_001146_090--Hb_021650_050 Hb_001005_180 Hb_001005_180 Hb_002235_090--Hb_001005_180 Hb_022790_030 Hb_022790_030 Hb_002235_090--Hb_022790_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00473573 0 0.00700115 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00334364 0

CAGE analysis