Hb_002450_160

Information

Type -
Description -
Location Contig2450: 102233-102993
Sequence    

Annotation

kegg
ID rcu:RCOM_1496810
description MEN-8 protein precursor, putative
nr
ID XP_012090746.1
description PREDICTED: protein 108 [Jatropha curcas]
swissprot
ID Q38737
description Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1
trembl
ID A0A067JER3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26148 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_160 0.0 - - PREDICTED: protein 108 [Jatropha curcas]
2 Hb_000858_040 0.1614789873 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_007632_150 0.2878387497 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001049_080 0.2907491079 - - -
5 Hb_086922_010 0.2908685855 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
6 Hb_000261_270 0.2999890041 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
7 Hb_000392_200 0.3126842102 - - PREDICTED: cytochrome P450 98A2-like isoform X2 [Phoenix dactylifera]
8 Hb_135811_030 0.3167730158 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_069877_010 0.3187357376 - - chaperone protein DNAj, putative [Ricinus communis]
10 Hb_000816_070 0.3247954263 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001249_040 0.3250439149 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
12 Hb_152598_010 0.3256405301 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
13 Hb_103586_010 0.3258179154 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max]
14 Hb_000429_060 0.326487627 - - conserved hypothetical protein [Ricinus communis]
15 Hb_158845_020 0.3276946785 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
16 Hb_000071_080 0.3282398981 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
17 Hb_003247_050 0.3283059009 - - -
18 Hb_007524_090 0.3287306829 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_105767_020 0.3290634503 - - -
20 Hb_003209_180 0.3290797375 - - Alpha-1,4 glucan phosphorylase L-2 isozyme [Morus notabilis]

Gene co-expression network

sample Hb_002450_160 Hb_002450_160 Hb_000858_040 Hb_000858_040 Hb_002450_160--Hb_000858_040 Hb_007632_150 Hb_007632_150 Hb_002450_160--Hb_007632_150 Hb_001049_080 Hb_001049_080 Hb_002450_160--Hb_001049_080 Hb_086922_010 Hb_086922_010 Hb_002450_160--Hb_086922_010 Hb_000261_270 Hb_000261_270 Hb_002450_160--Hb_000261_270 Hb_000392_200 Hb_000392_200 Hb_002450_160--Hb_000392_200 Hb_000858_040--Hb_000261_270 Hb_009730_010 Hb_009730_010 Hb_000858_040--Hb_009730_010 Hb_001882_140 Hb_001882_140 Hb_000858_040--Hb_001882_140 Hb_001146_090 Hb_001146_090 Hb_000858_040--Hb_001146_090 Hb_002235_090 Hb_002235_090 Hb_000858_040--Hb_002235_090 Hb_007632_150--Hb_086922_010 Hb_135811_030 Hb_135811_030 Hb_007632_150--Hb_135811_030 Hb_069877_010 Hb_069877_010 Hb_007632_150--Hb_069877_010 Hb_007632_150--Hb_001049_080 Hb_000429_060 Hb_000429_060 Hb_007632_150--Hb_000429_060 Hb_113444_010 Hb_113444_010 Hb_007632_150--Hb_113444_010 Hb_001049_080--Hb_000392_200 Hb_001049_080--Hb_086922_010 Hb_023226_050 Hb_023226_050 Hb_001049_080--Hb_023226_050 Hb_001049_080--Hb_135811_030 Hb_001049_080--Hb_069877_010 Hb_086922_010--Hb_135811_030 Hb_086922_010--Hb_069877_010 Hb_086922_010--Hb_000429_060 Hb_086922_010--Hb_113444_010 Hb_000261_270--Hb_009730_010 Hb_000261_270--Hb_002235_090 Hb_000261_270--Hb_001882_140 Hb_000261_270--Hb_001146_090 Hb_000392_200--Hb_023226_050 Hb_000392_200--Hb_007632_150 Hb_000392_200--Hb_086922_010 Hb_162304_010 Hb_162304_010 Hb_000392_200--Hb_162304_010 Hb_000006_020 Hb_000006_020 Hb_000392_200--Hb_000006_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0697544 0 0.232422 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0543918 0

CAGE analysis