Hb_001882_140

Information

Type -
Description -
Location Contig1882: 135909-136103
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18596: 137091-138215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_140 0.0 - - -
2 Hb_002235_090 0.2051340227 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_000022_210 0.2353816486 - - PREDICTED: uncharacterized protein LOC105638395 [Jatropha curcas]
4 Hb_009398_010 0.2388856504 - - Putative pectate lyase 2 [Glycine soja]
5 Hb_002289_030 0.2391085413 - - PREDICTED: uncharacterized protein LOC103957017 [Pyrus x bretschneideri]
6 Hb_005316_010 0.2402264289 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_005204_060 0.2406847589 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_002094_060 0.2409365231 - - -
9 Hb_184964_010 0.2411405364 - - -
10 Hb_004324_140 0.2412953859 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
11 Hb_000905_020 0.2419972271 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
12 Hb_000383_030 0.2443361071 - - -
13 Hb_005389_180 0.2448513261 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
14 Hb_002671_070 0.2463516794 - - hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
15 Hb_005946_130 0.2463516794 - - -
16 Hb_001048_120 0.2468855824 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_070810_010 0.2479979623 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_005625_030 0.2480498311 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
19 Hb_000705_320 0.2490035193 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
20 Hb_000345_090 0.2498690146 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]

Gene co-expression network

sample Hb_001882_140 Hb_001882_140 Hb_002235_090 Hb_002235_090 Hb_001882_140--Hb_002235_090 Hb_000022_210 Hb_000022_210 Hb_001882_140--Hb_000022_210 Hb_009398_010 Hb_009398_010 Hb_001882_140--Hb_009398_010 Hb_002289_030 Hb_002289_030 Hb_001882_140--Hb_002289_030 Hb_005316_010 Hb_005316_010 Hb_001882_140--Hb_005316_010 Hb_005204_060 Hb_005204_060 Hb_001882_140--Hb_005204_060 Hb_009730_010 Hb_009730_010 Hb_002235_090--Hb_009730_010 Hb_000261_270 Hb_000261_270 Hb_002235_090--Hb_000261_270 Hb_000858_040 Hb_000858_040 Hb_002235_090--Hb_000858_040 Hb_001005_180 Hb_001005_180 Hb_002235_090--Hb_001005_180 Hb_022790_030 Hb_022790_030 Hb_002235_090--Hb_022790_030 Hb_000022_210--Hb_009398_010 Hb_000022_210--Hb_002289_030 Hb_000022_210--Hb_005204_060 Hb_002094_060 Hb_002094_060 Hb_000022_210--Hb_002094_060 Hb_184964_010 Hb_184964_010 Hb_000022_210--Hb_184964_010 Hb_004324_140 Hb_004324_140 Hb_000022_210--Hb_004324_140 Hb_009398_010--Hb_002289_030 Hb_009398_010--Hb_005204_060 Hb_009398_010--Hb_002094_060 Hb_009398_010--Hb_184964_010 Hb_009398_010--Hb_004324_140 Hb_000905_020 Hb_000905_020 Hb_009398_010--Hb_000905_020 Hb_002289_030--Hb_005204_060 Hb_002289_030--Hb_002094_060 Hb_002289_030--Hb_184964_010 Hb_002289_030--Hb_004324_140 Hb_002289_030--Hb_000905_020 Hb_002671_070 Hb_002671_070 Hb_005316_010--Hb_002671_070 Hb_005946_130 Hb_005946_130 Hb_005316_010--Hb_005946_130 Hb_001048_120 Hb_001048_120 Hb_005316_010--Hb_001048_120 Hb_070810_010 Hb_070810_010 Hb_005316_010--Hb_070810_010 Hb_005625_030 Hb_005625_030 Hb_005316_010--Hb_005625_030 Hb_000705_320 Hb_000705_320 Hb_005316_010--Hb_000705_320 Hb_005204_060--Hb_002094_060 Hb_005204_060--Hb_184964_010 Hb_005204_060--Hb_004324_140 Hb_005204_060--Hb_000905_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.980514 0 3.3189 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.91661 0

CAGE analysis