Hb_000261_270

Information

Type -
Description -
Location Contig261: 232219-233336
Sequence    

Annotation

kegg
ID rcu:RCOM_1019120
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative (EC:2.4.1.207)
nr
ID XP_002518076.1
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
swissprot
ID Q9SV60
description Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1
trembl
ID B9RWF7
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_1019120 PE=3 SV=1
Gene Ontology
ID GO:0005618
description xyloglucan endotransglucosylase hydrolase protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27279: 206363-256628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_270 0.0 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
2 Hb_009730_010 0.1290148945 - - -
3 Hb_000858_040 0.1413993621 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_002235_090 0.2240153953 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_002450_160 0.2999890041 - - PREDICTED: protein 108 [Jatropha curcas]
6 Hb_001882_140 0.3060056124 - - -
7 Hb_001146_090 0.3255759397 - - valacyclovir hydrolase, putative [Ricinus communis]
8 Hb_030545_040 0.3389758728 - - -
9 Hb_075351_010 0.3705224665 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
10 Hb_001258_070 0.398879207 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001948_010 0.4022137161 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
12 Hb_021650_050 0.4033583741 - - hypothetical protein RCOM_0852210 [Ricinus communis]
13 Hb_002545_030 0.4065634713 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000441_010 0.4065649678 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
15 Hb_014720_060 0.4065693618 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
16 Hb_131101_010 0.4069119105 - - -
17 Hb_001761_110 0.4070974029 - - Contains similarity to Cf-2.2 gene gb
18 Hb_000964_160 0.4085024905 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
19 Hb_007245_010 0.408818958 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
20 Hb_043295_010 0.4088286317 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000261_270 Hb_000261_270 Hb_009730_010 Hb_009730_010 Hb_000261_270--Hb_009730_010 Hb_000858_040 Hb_000858_040 Hb_000261_270--Hb_000858_040 Hb_002235_090 Hb_002235_090 Hb_000261_270--Hb_002235_090 Hb_002450_160 Hb_002450_160 Hb_000261_270--Hb_002450_160 Hb_001882_140 Hb_001882_140 Hb_000261_270--Hb_001882_140 Hb_001146_090 Hb_001146_090 Hb_000261_270--Hb_001146_090 Hb_009730_010--Hb_002235_090 Hb_009730_010--Hb_000858_040 Hb_009730_010--Hb_001882_140 Hb_030545_040 Hb_030545_040 Hb_009730_010--Hb_030545_040 Hb_047735_010 Hb_047735_010 Hb_009730_010--Hb_047735_010 Hb_000858_040--Hb_002450_160 Hb_000858_040--Hb_001882_140 Hb_000858_040--Hb_001146_090 Hb_000858_040--Hb_002235_090 Hb_002235_090--Hb_001882_140 Hb_001005_180 Hb_001005_180 Hb_002235_090--Hb_001005_180 Hb_022790_030 Hb_022790_030 Hb_002235_090--Hb_022790_030 Hb_007632_150 Hb_007632_150 Hb_002450_160--Hb_007632_150 Hb_001049_080 Hb_001049_080 Hb_002450_160--Hb_001049_080 Hb_086922_010 Hb_086922_010 Hb_002450_160--Hb_086922_010 Hb_000392_200 Hb_000392_200 Hb_002450_160--Hb_000392_200 Hb_000022_210 Hb_000022_210 Hb_001882_140--Hb_000022_210 Hb_009398_010 Hb_009398_010 Hb_001882_140--Hb_009398_010 Hb_002289_030 Hb_002289_030 Hb_001882_140--Hb_002289_030 Hb_005316_010 Hb_005316_010 Hb_001882_140--Hb_005316_010 Hb_005204_060 Hb_005204_060 Hb_001882_140--Hb_005204_060 Hb_002843_090 Hb_002843_090 Hb_001146_090--Hb_002843_090 Hb_000364_070 Hb_000364_070 Hb_001146_090--Hb_000364_070 Hb_059301_010 Hb_059301_010 Hb_001146_090--Hb_059301_010 Hb_021650_050 Hb_021650_050 Hb_001146_090--Hb_021650_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.026215 0 0.0196942 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.019107 0

CAGE analysis