Hb_000640_290

Information

Type -
Description -
Location Contig640: 267683-268054
Sequence    

Annotation

kegg
ID pop:POPTR_0002s19420g
description POPTRDRAFT_552553; hypothetical protein
nr
ID AHY20045.1
description basic helix-loop-helix protein [Populus simonii x Populus nigra]
swissprot
ID O22901
description Transcription factor UPBEAT1 OS=Arabidopsis thaliana GN=UPB1 PE=2 SV=1
trembl
ID B9GSV5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19420g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52129: 267309-267415
cDNA
(Sanger)
(ID:Location)		 006_L14.ab1: 267580-268277

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_290 0.0 - - basic helix-loop-helix protein [Populus simonii x Populus nigra]
2 Hb_000059_190 0.130539404 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
3 Hb_123713_010 0.1424005331 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_003680_180 0.1436874127 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_004774_080 0.1440854394 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000802_070 0.1451962836 - - PREDICTED: LOW QUALITY PROTEIN: eugenol synthase 1-like [Jatropha curcas]
7 Hb_000175_080 0.1467614447 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
8 Hb_000134_300 0.1495337199 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_003185_040 0.1511265487 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
10 Hb_000336_010 0.1511681443 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
11 Hb_004724_280 0.1545681514 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002790_010 0.1584009026 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_001123_330 0.1617494257 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
14 Hb_118282_020 0.1726147619 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
15 Hb_003085_070 0.1727365459 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
16 Hb_007474_010 0.1741396364 - - vacuolar invertase [Manihot esculenta]
17 Hb_001662_120 0.1743590704 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
18 Hb_003055_160 0.1754071897 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
19 Hb_057575_010 0.1757325084 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004880_040 0.1800963252 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_290 Hb_000640_290 Hb_000059_190 Hb_000059_190 Hb_000640_290--Hb_000059_190 Hb_123713_010 Hb_123713_010 Hb_000640_290--Hb_123713_010 Hb_003680_180 Hb_003680_180 Hb_000640_290--Hb_003680_180 Hb_004774_080 Hb_004774_080 Hb_000640_290--Hb_004774_080 Hb_000802_070 Hb_000802_070 Hb_000640_290--Hb_000802_070 Hb_000175_080 Hb_000175_080 Hb_000640_290--Hb_000175_080 Hb_000059_190--Hb_000802_070 Hb_000134_300 Hb_000134_300 Hb_000059_190--Hb_000134_300 Hb_000059_190--Hb_003680_180 Hb_003185_040 Hb_003185_040 Hb_000059_190--Hb_003185_040 Hb_000059_190--Hb_000175_080 Hb_000336_010 Hb_000336_010 Hb_000059_190--Hb_000336_010 Hb_005353_010 Hb_005353_010 Hb_123713_010--Hb_005353_010 Hb_123713_010--Hb_000336_010 Hb_164853_010 Hb_164853_010 Hb_123713_010--Hb_164853_010 Hb_004724_280 Hb_004724_280 Hb_123713_010--Hb_004724_280 Hb_105377_010 Hb_105377_010 Hb_123713_010--Hb_105377_010 Hb_007317_050 Hb_007317_050 Hb_123713_010--Hb_007317_050 Hb_003680_180--Hb_000134_300 Hb_002790_010 Hb_002790_010 Hb_003680_180--Hb_002790_010 Hb_003680_180--Hb_000802_070 Hb_003680_180--Hb_000175_080 Hb_001123_330 Hb_001123_330 Hb_003680_180--Hb_001123_330 Hb_006573_310 Hb_006573_310 Hb_004774_080--Hb_006573_310 Hb_118282_020 Hb_118282_020 Hb_004774_080--Hb_118282_020 Hb_004774_080--Hb_000134_300 Hb_004774_080--Hb_003680_180 Hb_034420_010 Hb_034420_010 Hb_004774_080--Hb_034420_010 Hb_000527_020 Hb_000527_020 Hb_004774_080--Hb_000527_020 Hb_000802_070--Hb_000134_300 Hb_000802_070--Hb_002790_010 Hb_000802_070--Hb_034420_010 Hb_000010_430 Hb_000010_430 Hb_000802_070--Hb_000010_430 Hb_000175_080--Hb_000336_010 Hb_000175_080--Hb_004724_280 Hb_000175_080--Hb_001123_330 Hb_003420_010 Hb_003420_010 Hb_000175_080--Hb_003420_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.21217 3.71945 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.282335 0 0.309385

CAGE analysis