Hb_000007_120

Information

Type desease resistance
Description Gene Name: PRK
Location Contig7: 119271-126940
Sequence    

Annotation

kegg
ID rcu:RCOM_1464850
description uridine cytidine kinase I, putative (EC:2.7.1.48)
nr
ID XP_002514541.1
description uridine cytidine kinase I, putative [Ricinus communis]
swissprot
ID Q54R62
description Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1
trembl
ID B9RLC2
description Uridine kinase OS=Ricinus communis GN=RCOM_1464850 PE=3 SV=1
Gene Ontology
ID GO:0004849
description uridine-cytidine kinase c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54734: 120329-122891 , PASA_asmbl_54735: 121116-121235 , PASA_asmbl_54736: 123037-127025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_120 0.0 desease resistance Gene Name: PRK uridine cytidine kinase I, putative [Ricinus communis]
2 Hb_003435_020 0.1558398003 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000086_230 0.1564279527 - - serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_008494_100 0.1660546163 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
5 Hb_000696_290 0.1673471646 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
6 Hb_008623_020 0.1681625474 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
7 Hb_004157_040 0.1700469648 - - Rab2 [Hevea brasiliensis]
8 Hb_005645_010 0.1704315941 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
9 Hb_004058_030 0.1729977431 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
10 Hb_000062_220 0.1752088693 - - BnaC02g35870D [Brassica napus]
11 Hb_000300_160 0.1755317395 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
12 Hb_022318_010 0.1759238967 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001635_180 0.176949565 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
14 Hb_003963_010 0.1769947758 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000025_640 0.1789433548 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
16 Hb_005194_010 0.1791116645 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
17 Hb_075449_010 0.1793300004 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
18 Hb_001828_060 0.1799537906 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
19 Hb_012490_070 0.1803333606 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000340_180 0.1806572221 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_120 Hb_000007_120 Hb_003435_020 Hb_003435_020 Hb_000007_120--Hb_003435_020 Hb_000086_230 Hb_000086_230 Hb_000007_120--Hb_000086_230 Hb_008494_100 Hb_008494_100 Hb_000007_120--Hb_008494_100 Hb_000696_290 Hb_000696_290 Hb_000007_120--Hb_000696_290 Hb_008623_020 Hb_008623_020 Hb_000007_120--Hb_008623_020 Hb_004157_040 Hb_004157_040 Hb_000007_120--Hb_004157_040 Hb_005054_350 Hb_005054_350 Hb_003435_020--Hb_005054_350 Hb_000172_320 Hb_000172_320 Hb_003435_020--Hb_000172_320 Hb_006693_020 Hb_006693_020 Hb_003435_020--Hb_006693_020 Hb_002078_140 Hb_002078_140 Hb_003435_020--Hb_002078_140 Hb_000059_370 Hb_000059_370 Hb_003435_020--Hb_000059_370 Hb_000431_170 Hb_000431_170 Hb_003435_020--Hb_000431_170 Hb_001691_140 Hb_001691_140 Hb_000086_230--Hb_001691_140 Hb_003064_020 Hb_003064_020 Hb_000086_230--Hb_003064_020 Hb_000084_160 Hb_000084_160 Hb_000086_230--Hb_000084_160 Hb_000099_150 Hb_000099_150 Hb_000086_230--Hb_000099_150 Hb_000589_120 Hb_000589_120 Hb_000086_230--Hb_000589_120 Hb_001828_060 Hb_001828_060 Hb_000086_230--Hb_001828_060 Hb_000390_300 Hb_000390_300 Hb_008494_100--Hb_000390_300 Hb_007676_080 Hb_007676_080 Hb_008494_100--Hb_007676_080 Hb_008847_030 Hb_008847_030 Hb_008494_100--Hb_008847_030 Hb_004586_420 Hb_004586_420 Hb_008494_100--Hb_004586_420 Hb_000003_230 Hb_000003_230 Hb_008494_100--Hb_000003_230 Hb_000340_180 Hb_000340_180 Hb_008494_100--Hb_000340_180 Hb_000696_290--Hb_004157_040 Hb_006256_030 Hb_006256_030 Hb_000696_290--Hb_006256_030 Hb_011671_100 Hb_011671_100 Hb_000696_290--Hb_011671_100 Hb_116608_010 Hb_116608_010 Hb_000696_290--Hb_116608_010 Hb_004324_090 Hb_004324_090 Hb_000696_290--Hb_004324_090 Hb_000115_220 Hb_000115_220 Hb_000696_290--Hb_000115_220 Hb_075449_010 Hb_075449_010 Hb_008623_020--Hb_075449_010 Hb_000062_220 Hb_000062_220 Hb_008623_020--Hb_000062_220 Hb_012019_010 Hb_012019_010 Hb_008623_020--Hb_012019_010 Hb_000928_210 Hb_000928_210 Hb_008623_020--Hb_000928_210 Hb_000617_150 Hb_000617_150 Hb_008623_020--Hb_000617_150 Hb_002256_020 Hb_002256_020 Hb_008623_020--Hb_002256_020 Hb_000527_060 Hb_000527_060 Hb_004157_040--Hb_000527_060 Hb_024439_010 Hb_024439_010 Hb_004157_040--Hb_024439_010 Hb_000805_240 Hb_000805_240 Hb_004157_040--Hb_000805_240 Hb_006615_240 Hb_006615_240 Hb_004157_040--Hb_006615_240 Hb_004696_080 Hb_004696_080 Hb_004157_040--Hb_004696_080 Hb_004157_040--Hb_000115_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.750967 2.19884 1.63924 2.3808 4.46113 1.63876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.108 5.90757 3.20456 2.54429 1.40351

CAGE analysis