Gene annotation
Transcriptome id Sobic.010G017000.1,Sobic.010G017000.2
Synonym Sb10g001660
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1W0VR27 , C5Z2Y0
Pfam PF00076
Panther DB PTHR10501 PTHR10501:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0017069snRNA binding GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT1G76940 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os06g03690.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050216
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G017000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
2 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
3 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
4 Sobic.003G052400 proline-rich family protein, putative, expressed -
5 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
6 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
7 Sobic.007G059900 DUF292 domain containing protein, expressed -
8 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
9 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
10 Sobic.002G261900 arabinogalactan protein, putative, expressed -
11 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
12 Sobic.003G189700 thioredoxin, putative, expressed -
13 Sobic.001G408100 Yip1 domain containing protein, expressed -
14 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
15 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
16 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
17 Sobic.009G152200 OsFBT7 - F-box and tubby domain containing protein, expressed -
18 Sobic.003G217100 Yip1 domain containing protein, expressed -
19 Sobic.002G272600 TBC domain containing protein, expressed -
20 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1


Gene co-expression network
sample Sobic010G017000 Sobic010G017000 Sobic006G222400 Sobic006G222400 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic003G052400 Sobic003G052400 Sobic010G017000--Sobic003G052400 Sobic009G160200 Sobic009G160200 Sobic010G017000--Sobic009G160200 Sobic003G038600 Sobic003G038600 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic001G283500 Sobic001G283500 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic003G217100 Sobic003G217100 Sobic006G222400--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic006G222400--Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic010G016400 Sobic010G016400 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic007G148800 Sobic007G148800 Sobic006G217700--Sobic007G148800 Sobic001G010700 Sobic001G010700 Sobic003G021200--Sobic001G010700 Sobic003G021200--Sobic006G222400 Sobic003G021200--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic003G021200--Sobic003G043400 Sobic004G335000 Sobic004G335000 Sobic003G021200--Sobic004G335000 Sobic001G402300 Sobic001G402300 Sobic003G021200--Sobic001G402300 Sobic003G021200--Sobic002G428200 Sobic003G021200--Sobic010G238700 Sobic006G127000 Sobic006G127000 Sobic003G021200--Sobic006G127000 Sobic003G052400--Sobic010G017000 Sobic001G408100 Sobic001G408100 Sobic003G052400--Sobic001G408100 Sobic002G348600 Sobic002G348600 Sobic003G052400--Sobic002G348600 Sobic001G067900 Sobic001G067900 Sobic003G052400--Sobic001G067900 Sobic008G003600 Sobic008G003600 Sobic003G052400--Sobic008G003600 Sobic003G052400--Sobic003G217100 Sobic003G052400--Sobic009G160200 Sobic006G257001 Sobic006G257001 Sobic003G052400--Sobic006G257001 Sobic001G237500 Sobic001G237500 Sobic003G052400--Sobic001G237500 Sobic009G160200--Sobic001G283500 Sobic009G160200--Sobic006G222400 Sobic001G311100 Sobic001G311100 Sobic009G160200--Sobic001G311100 Sobic009G160200--Sobic010G017000 Sobic009G160200--Sobic003G217100 Sobic002G261900 Sobic002G261900 Sobic009G160200--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic009G160200--Sobic010G094600 Sobic009G160200--Sobic003G043400 Sobic009G160200--Sobic003G052400 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic003G220600 Sobic003G220600 Sobic007G059900--Sobic003G220600 Sobic006G062800 Sobic006G062800 Sobic007G059900--Sobic006G062800 Sobic010G204300 Sobic010G204300 Sobic007G059900--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic007G059900--Sobic007G186300 Sobic007G059900--Sobic002G261900 Sobic008G161000 Sobic008G161000 Sobic007G059900--Sobic008G161000 Sobic004G293700 Sobic004G293700 Sobic007G059900--Sobic004G293700 Sobic002G296300 Sobic002G296300 Sobic007G059900--Sobic002G296300 Sobic009G152200 Sobic009G152200 Sobic007G059900--Sobic009G152200 Sobic008G016900 Sobic008G016900 Sobic001G283500--Sobic008G016900 Sobic007G195701 Sobic007G195701 Sobic001G283500--Sobic007G195701 Sobic001G403700 Sobic001G403700 Sobic001G283500--Sobic001G403700 Sobic003G115800 Sobic003G115800 Sobic001G283500--Sobic003G115800 Sobic001G283500--Sobic009G160200 Sobic001G283500--Sobic010G204300 Sobic001G283500--Sobic002G296300 Sobic010G062800 Sobic010G062800 Sobic001G283500--Sobic010G062800 Sobic010G188100 Sobic010G188100 Sobic001G283500--Sobic010G188100 Sobic005G157200 Sobic005G157200 Sobic009G008600--Sobic005G157200 Sobic010G213400 Sobic010G213400 Sobic009G008600--Sobic010G213400 Sobic001G331900 Sobic001G331900 Sobic009G008600--Sobic001G331900 Sobic009G008600--Sobic008G132800 Sobic001G529000 Sobic001G529000 Sobic009G008600--Sobic001G529000 Sobic003G362400 Sobic003G362400 Sobic009G008600--Sobic003G362400 Sobic009G008600--Sobic006G222400 Sobic002G263800 Sobic002G263800 Sobic009G008600--Sobic002G263800 Sobic010G008100 Sobic010G008100 Sobic009G008600--Sobic010G008100
Octagon: transcription factors


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