Gene annotation
Transcriptome id Sobic.003G021200.1
Synonym Sb03g001760
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XL07
Pfam PF00400
Panther DB PTHR11024
NCBI CDD KOG1332; Vesicle coat complex COPII, subunit SEC13
KEGG Orthology K14004; protein transport protein SEC13
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G30050 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g04320.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035920 , Zm00025a022900
Brachypodium KQK03310
Barley HORVU3Hr1G027730.1 , HORVU3Hr1G027730.2 , HORVU3Hr1G027730.3
Wheat TraesCS3B02G162400
Populus -


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cDNA sequences
Sobic.003G021200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
2 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
3 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
4 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
5 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
6 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
7 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
8 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
9 Sobic.006G127000 Divergent PAP2 family domain containing protein, expressed K09775: uncharacterized protein
10 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
11 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
13 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
14 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
16 Sobic.001G285300 expressed protein -
17 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
18 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
19 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
20 Sobic.001G041100 RNA recognition motif containing protein, putative, expressed K12833: pre-mRNA branch site protein p14


Gene co-expression network
sample Sobic003G021200 Sobic003G021200 Sobic001G010700 Sobic001G010700 Sobic003G021200--Sobic001G010700 Sobic006G222400 Sobic006G222400 Sobic003G021200--Sobic006G222400 Sobic010G017000 Sobic010G017000 Sobic003G021200--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic003G021200--Sobic003G043400 Sobic004G335000 Sobic004G335000 Sobic003G021200--Sobic004G335000 Sobic001G402300 Sobic001G402300 Sobic003G021200--Sobic001G402300 Sobic002G428200 Sobic002G428200 Sobic003G021200--Sobic002G428200 Sobic010G238700 Sobic010G238700 Sobic003G021200--Sobic010G238700 Sobic006G127000 Sobic006G127000 Sobic003G021200--Sobic006G127000 Sobic007G176200 Sobic007G176200 Sobic001G010700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G010700--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic001G010700--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic004G224900 Sobic004G224900 Sobic001G010700--Sobic004G224900 Sobic001G010700--Sobic003G043400 Sobic002G423800 Sobic002G423800 Sobic001G010700--Sobic002G423800 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic003G217100 Sobic003G217100 Sobic006G222400--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic006G222400--Sobic010G017000 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic010G017000--Sobic003G021200 Sobic003G052400 Sobic003G052400 Sobic010G017000--Sobic003G052400 Sobic009G160200 Sobic009G160200 Sobic010G017000--Sobic009G160200 Sobic003G038600 Sobic003G038600 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic001G283500 Sobic001G283500 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic003G043400--Sobic002G423800 Sobic003G043400--Sobic001G010700 Sobic003G043400--Sobic002G428200 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic003G043400--Sobic006G222400 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic002G257400 Sobic002G257400 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic010G251100 Sobic010G251100 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic010G238700--Sobic006G222400 Sobic010G238700--Sobic001G529000 Sobic009G036900 Sobic009G036900 Sobic010G238700--Sobic009G036900 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic004G203100 Sobic004G203100 Sobic010G238700--Sobic004G203100 Sobic003G007500 Sobic003G007500 Sobic010G238700--Sobic003G007500 Sobic010G238700--Sobic008G132800 Sobic010G238700--Sobic001G010700 Sobic006G127000--Sobic003G021200 Sobic006G127000--Sobic001G529000 Sobic003G362400 Sobic003G362400 Sobic006G127000--Sobic003G362400 Sobic002G309400 Sobic002G309400 Sobic006G127000--Sobic002G309400 Sobic006G127000--Sobic010G238700 Sobic010G253800 Sobic010G253800 Sobic006G127000--Sobic010G253800 Sobic001G367000 Sobic001G367000 Sobic006G127000--Sobic001G367000 Sobic001G041100 Sobic001G041100 Sobic006G127000--Sobic001G041100 Sobic006G127000--Sobic010G017000
Octagon: transcription factors


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