Gene annotation
Transcriptome id Sobic.006G222400.1
Synonym ATRBP45B, Sb06g029180, RBP45B
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PNA9
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF333
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G11650 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g53440.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029968 , Zm00025a057075 , Zm00025a009704 , Zm00025a017381
Brachypodium KQJ95099 , KQJ84714 , KQJ84715
Barley HORVU7Hr1G066510.3 , HORVU7Hr1G066510.2 , HORVU7Hr1G066510.5 , HORVU7Hr1G066510.4 , HORVU7Hr1G066510.8 , HORVU7Hr1G066510.7 , HORVU7Hr1G066510.6 , HORVU7Hr1G066510.9 , HORVU2Hr1G106810.9 , HORVU2Hr1G106810.3 , HORVU2Hr1G106810.1 , HORVU2Hr1G106810.6 , HORVU2Hr1G106810.7 , HORVU2Hr1G106810.4 , HORVU2Hr1G106810.5 , HORVU7Hr1G066510.13 , HORVU7Hr1G066510.12 , HORVU7Hr1G066510.11 , HORVU7Hr1G066510.10 , HORVU7Hr1G066510.14 , HORVU2Hr1G106810.10
Wheat TraesCS6B02G128900 , TraesCS6B02G128900 , TraesCS2D02G472700 , TraesCS2D02G472700 , TraesCS6D02G081700 , TraesCS6D02G081700 , TraesCS6D02G081700 , TraesCS2A02G473000 , TraesCS2B02G495700 , TraesCS2B02G495700 , TraesCS7A02G295700 , TraesCS7A02G295700 , TraesCS7A02G295700 , TraesCS7B02G199000 , TraesCS6A02G100800
Populus -


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cDNA sequences
Sobic.006G222400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
2 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
3 Sobic.003G217100 Yip1 domain containing protein, expressed -
4 Sobic.008G132800 expressed protein -
5 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
6 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
7 Sobic.001G105100 neighbor of COX4, putative, expressed -
8 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
9 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
10 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
11 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
12 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
13 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
14 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
15 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
16 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
17 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
18 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
19 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
20 Sobic.010G065400 X0001, putative, expressed -


Gene co-expression network
sample Sobic006G222400 Sobic006G222400 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic003G217100 Sobic003G217100 Sobic006G222400--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic010G017000 Sobic010G017000 Sobic006G222400--Sobic010G017000 Sobic010G238700--Sobic006G222400 Sobic001G529000 Sobic001G529000 Sobic010G238700--Sobic001G529000 Sobic009G036900 Sobic009G036900 Sobic010G238700--Sobic009G036900 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic004G203100 Sobic004G203100 Sobic010G238700--Sobic004G203100 Sobic003G007500 Sobic003G007500 Sobic010G238700--Sobic003G007500 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700 Sobic001G126200--Sobic006G222400 Sobic001G126200--Sobic004G224800 Sobic006G094600 Sobic006G094600 Sobic001G126200--Sobic006G094600 Sobic003G131300 Sobic003G131300 Sobic001G126200--Sobic003G131300 Sobic001G285300 Sobic001G285300 Sobic001G126200--Sobic001G285300 Sobic001G126200--Sobic010G238700 Sobic001G367000 Sobic001G367000 Sobic001G126200--Sobic001G367000 Sobic002G044000 Sobic002G044000 Sobic001G126200--Sobic002G044000 Sobic007G192100 Sobic007G192100 Sobic001G126200--Sobic007G192100 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic001G237500 Sobic001G237500 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic010G029400 Sobic010G029400 Sobic008G132800--Sobic010G029400 Sobic002G078400 Sobic002G078400 Sobic008G132800--Sobic002G078400 Sobic009G016201 Sobic009G016201 Sobic008G132800--Sobic009G016201 Sobic001G331900 Sobic001G331900 Sobic008G132800--Sobic001G331900 Sobic004G066800 Sobic004G066800 Sobic008G132800--Sobic004G066800 Sobic008G132800--Sobic001G105100 Sobic005G157200 Sobic005G157200 Sobic008G132800--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G132800--Sobic010G065400 Sobic008G132800--Sobic003G217100 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic007G176200 Sobic007G176200 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic006G252200 Sobic006G252200 Sobic002G428200--Sobic006G252200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic001G105100--Sobic001G067900 Sobic001G105100--Sobic003G217100 Sobic001G105100--Sobic008G132800 Sobic006G257001 Sobic006G257001 Sobic001G105100--Sobic006G257001 Sobic006G034800 Sobic006G034800 Sobic001G105100--Sobic006G034800 Sobic010G105600 Sobic010G105600 Sobic001G105100--Sobic010G105600 Sobic001G105100--Sobic001G237500 Sobic001G105100--Sobic006G222400 Sobic001G105100--Sobic008G137600 Sobic003G124800 Sobic003G124800 Sobic004G224800--Sobic003G124800 Sobic004G334800 Sobic004G334800 Sobic004G224800--Sobic004G334800 Sobic004G224800--Sobic001G529000 Sobic004G224800--Sobic004G066800 Sobic001G439600 Sobic001G439600 Sobic004G224800--Sobic001G439600 Sobic010G039800 Sobic010G039800 Sobic004G224800--Sobic010G039800 Sobic004G224800--Sobic001G367000 Sobic004G224800--Sobic001G126200 Sobic001G054200 Sobic001G054200 Sobic004G224800--Sobic001G054200 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic003G052400 Sobic003G052400 Sobic010G017000--Sobic003G052400 Sobic009G160200 Sobic009G160200 Sobic010G017000--Sobic009G160200 Sobic003G038600 Sobic003G038600 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic001G283500 Sobic001G283500 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600
Octagon: transcription factors


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