Gene annotation
Transcriptome id Sobic.002G090700.1
Synonym Sb02g007513
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5X218
Pfam PF00400
Panther DB PTHR11024 PTHR11024:SF11
NCBI CDD KOG1332; Vesicle coat complex COPII, subunit SEC13
KEGG Orthology K14004; protein transport protein SEC13
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G30050 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os07g14280.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045503 , Zm00025a013607
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
2 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
3 Sobic.003G217100 Yip1 domain containing protein, expressed -
4 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
5 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
6 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
7 Sobic.001G309500 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
8 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
9 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
10 Sobic.008G132800 expressed protein -
11 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
12 Sobic.003G332401 - K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
13 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
14 Sobic.002G296300 expressed protein -
15 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
16 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
17 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
18 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
19 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
20 Sobic.004G334800 vacuolar protein sorting 55 family protein, putative, expressed -


Gene co-expression network
sample Sobic002G090700 Sobic002G090700 Sobic003G116600 Sobic003G116600 Sobic002G090700--Sobic003G116600 Sobic010G007400 Sobic010G007400 Sobic002G090700--Sobic010G007400 Sobic003G217100 Sobic003G217100 Sobic002G090700--Sobic003G217100 Sobic004G159000 Sobic004G159000 Sobic002G090700--Sobic004G159000 Sobic003G152900 Sobic003G152900 Sobic002G090700--Sobic003G152900 Sobic004G066800 Sobic004G066800 Sobic002G090700--Sobic004G066800 Sobic001G309500 Sobic001G309500 Sobic002G090700--Sobic001G309500 Sobic002G078400 Sobic002G078400 Sobic002G090700--Sobic002G078400 Sobic001G031900 Sobic001G031900 Sobic002G090700--Sobic001G031900 Sobic003G116600--Sobic002G090700 Sobic003G116600--Sobic010G007400 Sobic005G184200 Sobic005G184200 Sobic003G116600--Sobic005G184200 Sobic003G116600--Sobic004G159000 Sobic004G339300 Sobic004G339300 Sobic003G116600--Sobic004G339300 Sobic001G367000 Sobic001G367000 Sobic003G116600--Sobic001G367000 Sobic004G202100 Sobic004G202100 Sobic003G116600--Sobic004G202100 Sobic003G116600--Sobic001G309500 Sobic002G401700 Sobic002G401700 Sobic003G116600--Sobic002G401700 Sobic004G030000 Sobic004G030000 Sobic010G007400--Sobic004G030000 Sobic010G007400--Sobic002G090700 Sobic010G007400--Sobic003G116600 Sobic010G007400--Sobic002G401700 Sobic010G007400--Sobic004G159000 Sobic010G007400--Sobic001G031900 Sobic007G013900 Sobic007G013900 Sobic010G007400--Sobic007G013900 Sobic010G007400--Sobic003G152900 Sobic001G074700 Sobic001G074700 Sobic010G007400--Sobic001G074700 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic003G217100--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic003G217100--Sobic008G132800 Sobic006G222400 Sobic006G222400 Sobic003G217100--Sobic006G222400 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic003G217100--Sobic005G184200 Sobic001G237500 Sobic001G237500 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic004G159000--Sobic007G013900 Sobic004G344800 Sobic004G344800 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G159000--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic004G159000--Sobic003G196600 Sobic004G159000--Sobic002G090700 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic004G159000--Sobic010G007400 Sobic003G152900--Sobic004G030000 Sobic003G152900--Sobic001G074700 Sobic004G170400 Sobic004G170400 Sobic003G152900--Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic003G152900--Sobic001G350600 Sobic010G154700 Sobic010G154700 Sobic003G152900--Sobic010G154700 Sobic003G152900--Sobic001G031900 Sobic003G152900--Sobic002G090700 Sobic003G152900--Sobic004G159000 Sobic003G152900--Sobic004G066800 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic004G196300 Sobic004G196300 Sobic001G309500--Sobic004G196300 Sobic010G153100 Sobic010G153100 Sobic001G309500--Sobic010G153100 Sobic001G309500--Sobic002G078400 Sobic001G309500--Sobic003G217100 Sobic001G526100 Sobic001G526100 Sobic001G309500--Sobic001G526100 Sobic001G309500--Sobic002G090700 Sobic001G309500--Sobic008G132800 Sobic001G309500--Sobic004G066800 Sobic001G309500--Sobic003G155400 Sobic004G300900 Sobic004G300900 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic002G078400--Sobic008G132800 Sobic001G445800 Sobic001G445800 Sobic002G078400--Sobic001G445800 Sobic001G331900 Sobic001G331900 Sobic002G078400--Sobic001G331900 Sobic009G198500 Sobic009G198500 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic006G058900 Sobic006G058900 Sobic001G031900--Sobic006G058900 Sobic001G031900--Sobic004G202100 Sobic002G395000 Sobic002G395000 Sobic001G031900--Sobic002G395000 Sobic001G031900--Sobic001G350600 Sobic001G031900--Sobic004G344800 Sobic001G031900--Sobic003G152900 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic001G031900--Sobic004G030000
Octagon: transcription factors


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