Gene annotation
Transcriptome id Sobic.004G066800.1
Synonym PBC1, Sb04g005590
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5XWW6
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF62
NCBI CDD KOG0180; 20S proteasome, regulatory subunit beta type PSMB3/PUP3
KEGG Orthology K02735; 20S proteasome subunit beta 3
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G21720 : proteasome beta subunit C1
RAP-DB (Rice) LOC_Os02g08520.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a051410 , Zm00025a042074 , Zm00025a019250
Brachypodium PNT66042 , PNT66041 , KQK16759 , PNT75337
Barley HORVU6Hr1G065260.1 , HORVU7Hr1G115980.1 , HORVU0Hr1G015750.1 , HORVU0Hr1G015750.2
Wheat TraesCS7B02G437600 , TraesCS6B02G174200 , TraesCS6A02G145800 , TraesCS6D02G135100 , TraesCS7D02G510600 , TraesCS7A02G520800
Populus -


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cDNA sequences
Sobic.004G066800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
2 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
3 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
4 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
5 Sobic.010G154700 - -
6 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
7 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
8 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
9 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
10 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
11 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
12 Sobic.002G296200 expressed protein -
13 Sobic.008G132800 expressed protein -
14 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
15 Sobic.001G172000 expressed protein -
16 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
17 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
18 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
19 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
20 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4


Gene co-expression network
sample Sobic004G066800 Sobic004G066800 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic001G128400 Sobic001G128400 Sobic003G129800--Sobic001G128400 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G249700 Sobic003G249700 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic003G129800--Sobic001G513500 Sobic009G223300 Sobic009G223300 Sobic003G129800--Sobic009G223300 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic009G119900 Sobic009G119900 Sobic004G310300--Sobic009G119900 Sobic004G259200 Sobic004G259200 Sobic004G310300--Sobic004G259200 Sobic007G051000 Sobic007G051000 Sobic004G310300--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic004G310300--Sobic001G018500 Sobic010G204500 Sobic010G204500 Sobic004G310300--Sobic010G204500 Sobic004G310300--Sobic003G155400 Sobic004G310300--Sobic004G066800 Sobic004G310300--Sobic001G513500 Sobic005G188100 Sobic005G188100 Sobic004G310300--Sobic005G188100 Sobic001G483100--Sobic010G204500 Sobic009G180000 Sobic009G180000 Sobic001G483100--Sobic009G180000 Sobic001G014500 Sobic001G014500 Sobic001G483100--Sobic001G014500 Sobic002G056200 Sobic002G056200 Sobic001G483100--Sobic002G056200 Sobic001G483100--Sobic003G249700 Sobic005G229300 Sobic005G229300 Sobic001G483100--Sobic005G229300 Sobic002G379500 Sobic002G379500 Sobic001G483100--Sobic002G379500 Sobic001G537200 Sobic001G537200 Sobic001G483100--Sobic001G537200 Sobic003G109600 Sobic003G109600 Sobic001G483100--Sobic003G109600 Sobic007G092100--Sobic004G066800 Sobic001G057300 Sobic001G057300 Sobic007G092100--Sobic001G057300 Sobic001G505500 Sobic001G505500 Sobic007G092100--Sobic001G505500 Sobic001G035400 Sobic001G035400 Sobic007G092100--Sobic001G035400 Sobic001G342200 Sobic001G342200 Sobic007G092100--Sobic001G342200 Sobic003G330500 Sobic003G330500 Sobic007G092100--Sobic003G330500 Sobic001G096100 Sobic001G096100 Sobic007G092100--Sobic001G096100 Sobic004G138800 Sobic004G138800 Sobic007G092100--Sobic004G138800 Sobic007G092100--Sobic009G191200 Sobic001G048832 Sobic001G048832 Sobic010G154700--Sobic001G048832 Sobic001G132100 Sobic001G132100 Sobic010G154700--Sobic001G132100 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic010G154700--Sobic003G155400 Sobic010G154700--Sobic009G119900 Sobic002G190900 Sobic002G190900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic001G011200 Sobic001G011200 Sobic001G513500--Sobic001G011200 Sobic001G513500--Sobic002G056200 Sobic001G513500--Sobic003G129800 Sobic001G513500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic001G513500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic001G513500--Sobic009G179100 Sobic001G513500--Sobic004G310300 Sobic005G091700 Sobic005G091700 Sobic001G513500--Sobic005G091700 Sobic010G100000 Sobic010G100000 Sobic001G513500--Sobic010G100000 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic009G233400 Sobic009G233400 Sobic009G191200--Sobic009G233400 Sobic008G135000 Sobic008G135000 Sobic009G191200--Sobic008G135000 Sobic009G191200--Sobic001G334300 Sobic009G191200--Sobic001G058900 Sobic002G115000 Sobic002G115000 Sobic009G191200--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic009G191200--Sobic002G049300 Sobic009G191200--Sobic003G280700 Sobic001G085400 Sobic001G085400 Sobic009G191200--Sobic001G085400 Sobic009G191200--Sobic002G304900
Octagon: transcription factors


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