Gene annotation
Transcriptome id Sobic.003G116600.1
Synonym Sb03g009820, VAM3, SGR3, ATVAM3, SYP22, ATSYP22
Functional annotation syntaxin, putative, expressed
UniProt C5XFU8
Pfam PF05739 PF14523
Panther DB PTHR19957 PTHR19957:SF120
NCBI CDD KOG0811; SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
KEGG Orthology K08488; syntaxin 7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G46860 : Syntaxin/t-SNARE family protein
RAP-DB (Rice) LOC_Os01g15110.1 : syntaxin, putative, expressed
MaizeGDB (Corn) Zm00025a035334 , Zm00025a023952
Brachypodium KQK03647
Barley HORVU3Hr1G035380.1
Wheat TraesCS3A02G175000 , TraesCS3D02G180500
Populus -


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cDNA sequences
Sobic.003G116600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
2 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
3 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
4 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
5 Sobic.004G339300 ABC transporter, ATP-binding protein, putative, expressed K12608: CCR4-NOT complex subunit CAF16
6 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
7 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
8 Sobic.001G309500 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
9 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
10 Sobic.003G332401 - K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
11 Sobic.002G368400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
12 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
13 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
14 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
15 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
16 Sobic.002G040700 tetratricopeptide repeat, putative, expressed -
17 Sobic.001G050700 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
18 Sobic.003G273900 mitochondrial carrier protein, putative, expressed -
19 Sobic.002G194100 annexin, putative, expressed K17095: annexin A7/11
20 Sobic.002G342000 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic003G116600 Sobic003G116600 Sobic002G090700 Sobic002G090700 Sobic003G116600--Sobic002G090700 Sobic010G007400 Sobic010G007400 Sobic003G116600--Sobic010G007400 Sobic005G184200 Sobic005G184200 Sobic003G116600--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic003G116600--Sobic004G159000 Sobic004G339300 Sobic004G339300 Sobic003G116600--Sobic004G339300 Sobic001G367000 Sobic001G367000 Sobic003G116600--Sobic001G367000 Sobic004G202100 Sobic004G202100 Sobic003G116600--Sobic004G202100 Sobic001G309500 Sobic001G309500 Sobic003G116600--Sobic001G309500 Sobic002G401700 Sobic002G401700 Sobic003G116600--Sobic002G401700 Sobic002G090700--Sobic003G116600 Sobic002G090700--Sobic010G007400 Sobic003G217100 Sobic003G217100 Sobic002G090700--Sobic003G217100 Sobic002G090700--Sobic004G159000 Sobic003G152900 Sobic003G152900 Sobic002G090700--Sobic003G152900 Sobic004G066800 Sobic004G066800 Sobic002G090700--Sobic004G066800 Sobic002G090700--Sobic001G309500 Sobic002G078400 Sobic002G078400 Sobic002G090700--Sobic002G078400 Sobic001G031900 Sobic001G031900 Sobic002G090700--Sobic001G031900 Sobic004G030000 Sobic004G030000 Sobic010G007400--Sobic004G030000 Sobic010G007400--Sobic002G090700 Sobic010G007400--Sobic003G116600 Sobic010G007400--Sobic002G401700 Sobic010G007400--Sobic004G159000 Sobic010G007400--Sobic001G031900 Sobic007G013900 Sobic007G013900 Sobic010G007400--Sobic007G013900 Sobic010G007400--Sobic003G152900 Sobic001G074700 Sobic001G074700 Sobic010G007400--Sobic001G074700 Sobic001G112400 Sobic001G112400 Sobic005G184200--Sobic001G112400 Sobic005G184200--Sobic003G116600 Sobic001G443200 Sobic001G443200 Sobic005G184200--Sobic001G443200 Sobic005G184200--Sobic003G217100 Sobic001G332300 Sobic001G332300 Sobic005G184200--Sobic001G332300 Sobic004G344800 Sobic004G344800 Sobic005G184200--Sobic004G344800 Sobic005G184200--Sobic002G090700 Sobic001G378200 Sobic001G378200 Sobic005G184200--Sobic001G378200 Sobic008G110500 Sobic008G110500 Sobic005G184200--Sobic008G110500 Sobic004G159000--Sobic007G013900 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G159000--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic004G159000--Sobic003G196600 Sobic004G159000--Sobic002G090700 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic004G159000--Sobic010G007400 Sobic003G141700 Sobic003G141700 Sobic004G339300--Sobic003G141700 Sobic001G224400 Sobic001G224400 Sobic004G339300--Sobic001G224400 Sobic004G339300--Sobic003G116600 Sobic004G339300--Sobic001G074700 Sobic004G339300--Sobic003G152900 Sobic001G077000 Sobic001G077000 Sobic004G339300--Sobic001G077000 Sobic002G194100 Sobic002G194100 Sobic004G339300--Sobic002G194100 Sobic002G202300 Sobic002G202300 Sobic004G339300--Sobic002G202300 Sobic004G170400 Sobic004G170400 Sobic004G339300--Sobic004G170400 Sobic001G529000 Sobic001G529000 Sobic001G367000--Sobic001G529000 Sobic004G224800 Sobic004G224800 Sobic001G367000--Sobic004G224800 Sobic006G222400 Sobic006G222400 Sobic001G367000--Sobic006G222400 Sobic001G367000--Sobic002G090700 Sobic003G362400 Sobic003G362400 Sobic001G367000--Sobic003G362400 Sobic001G054200 Sobic001G054200 Sobic001G367000--Sobic001G054200 Sobic001G126200 Sobic001G126200 Sobic001G367000--Sobic001G126200 Sobic003G124800 Sobic003G124800 Sobic001G367000--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G367000--Sobic010G065400 Sobic004G202100--Sobic001G031900 Sobic002G395000 Sobic002G395000 Sobic004G202100--Sobic002G395000 Sobic004G262300 Sobic004G262300 Sobic004G202100--Sobic004G262300 Sobic006G058900 Sobic006G058900 Sobic004G202100--Sobic006G058900 Sobic001G282500 Sobic001G282500 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic002G309500 Sobic002G309500 Sobic004G202100--Sobic002G309500 Sobic004G297700 Sobic004G297700 Sobic004G202100--Sobic004G297700 Sobic007G023400 Sobic007G023400 Sobic004G202100--Sobic007G023400 Sobic004G196300 Sobic004G196300 Sobic001G309500--Sobic004G196300 Sobic010G153100 Sobic010G153100 Sobic001G309500--Sobic010G153100 Sobic001G309500--Sobic002G078400 Sobic001G309500--Sobic003G217100 Sobic001G526100 Sobic001G526100 Sobic001G309500--Sobic001G526100 Sobic001G309500--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic001G309500--Sobic008G132800 Sobic001G309500--Sobic004G066800 Sobic003G155400 Sobic003G155400 Sobic001G309500--Sobic003G155400 Sobic002G401700--Sobic010G007400 Sobic007G012900 Sobic007G012900 Sobic002G401700--Sobic007G012900 Sobic002G401700--Sobic004G159000 Sobic007G117800 Sobic007G117800 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic002G401700--Sobic003G116600 Sobic008G108500 Sobic008G108500 Sobic002G401700--Sobic008G108500 Sobic002G276800 Sobic002G276800 Sobic002G401700--Sobic002G276800 Sobic002G401700--Sobic001G378200
Octagon: transcription factors


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