Gene annotation
Transcriptome id Sobic.009G008600.1
Synonym Sb09g000940
Functional annotation REX1 DNA Repair family protein, expressed
UniProt C5YYE2
Pfam PF06331
Panther DB PTHR28580 PTHR28580:SF1
NCBI CDD KOG3451; Uncharacterized conserved protein
KEGG Orthology K10845; TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006289nucleotide-excision repair GO:0000439transcription factor TFIIH core complex


Orthologs (automatic annotation)
TAIR AT1G12400 : Nucleotide excision repair, TFIIH, subunit TTDA
RAP-DB (Rice) LOC_Os07g38600.1 : REX1 DNA Repair family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU1Hr1G003940.3 , HORVU1Hr1G003940.1
Wheat TraesCS1A02G027200 , TraesCS1D02G026400 , TraesCS1B02G033100
Populus -


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cDNA sequences
Sobic.009G008600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
2 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
3 Sobic.001G331900 expressed protein -
4 Sobic.008G132800 expressed protein -
5 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
6 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
7 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
8 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
9 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
10 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
11 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
12 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
13 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
14 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
15 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
16 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
17 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
18 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
19 Sobic.010G038700 expressed protein -
20 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13


Gene co-expression network
sample Sobic009G008600 Sobic009G008600 Sobic005G157200 Sobic005G157200 Sobic009G008600--Sobic005G157200 Sobic010G213400 Sobic010G213400 Sobic009G008600--Sobic010G213400 Sobic001G331900 Sobic001G331900 Sobic009G008600--Sobic001G331900 Sobic008G132800 Sobic008G132800 Sobic009G008600--Sobic008G132800 Sobic001G529000 Sobic001G529000 Sobic009G008600--Sobic001G529000 Sobic003G362400 Sobic003G362400 Sobic009G008600--Sobic003G362400 Sobic006G222400 Sobic006G222400 Sobic009G008600--Sobic006G222400 Sobic002G263800 Sobic002G263800 Sobic009G008600--Sobic002G263800 Sobic010G008100 Sobic010G008100 Sobic009G008600--Sobic010G008100 Sobic008G058300 Sobic008G058300 Sobic005G157200--Sobic008G058300 Sobic005G157200--Sobic001G331900 Sobic001G377800 Sobic001G377800 Sobic005G157200--Sobic001G377800 Sobic003G025200 Sobic003G025200 Sobic005G157200--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic005G157200--Sobic002G406500 Sobic007G163700 Sobic007G163700 Sobic005G157200--Sobic007G163700 Sobic010G029400 Sobic010G029400 Sobic005G157200--Sobic010G029400 Sobic004G107600 Sobic004G107600 Sobic005G157200--Sobic004G107600 Sobic005G157200--Sobic001G529000 Sobic003G368500 Sobic003G368500 Sobic010G213400--Sobic003G368500 Sobic003G249800 Sobic003G249800 Sobic010G213400--Sobic003G249800 Sobic009G033700 Sobic009G033700 Sobic010G213400--Sobic009G033700 Sobic004G284500 Sobic004G284500 Sobic010G213400--Sobic004G284500 Sobic010G163600 Sobic010G163600 Sobic010G213400--Sobic010G163600 Sobic001G224400 Sobic001G224400 Sobic010G213400--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic010G213400--Sobic006G062800 Sobic001G445800 Sobic001G445800 Sobic010G213400--Sobic001G445800 Sobic010G153100 Sobic010G153100 Sobic010G213400--Sobic010G153100 Sobic001G331900--Sobic004G107600 Sobic001G331900--Sobic005G157200 Sobic001G331900--Sobic008G058300 Sobic002G078400 Sobic002G078400 Sobic001G331900--Sobic002G078400 Sobic001G331900--Sobic008G132800 Sobic004G300900 Sobic004G300900 Sobic001G331900--Sobic004G300900 Sobic001G331900--Sobic001G377800 Sobic001G331900--Sobic003G362400 Sobic001G331900--Sobic001G529000 Sobic008G132800--Sobic010G029400 Sobic008G132800--Sobic002G078400 Sobic009G016201 Sobic009G016201 Sobic008G132800--Sobic009G016201 Sobic008G132800--Sobic001G331900 Sobic004G066800 Sobic004G066800 Sobic008G132800--Sobic004G066800 Sobic001G105100 Sobic001G105100 Sobic008G132800--Sobic001G105100 Sobic008G132800--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G132800--Sobic010G065400 Sobic003G217100 Sobic003G217100 Sobic008G132800--Sobic003G217100 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G529000--Sobic001G331900 Sobic001G529000--Sobic005G157200 Sobic001G529000--Sobic007G163700 Sobic010G039800 Sobic010G039800 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic001G529000--Sobic004G300900 Sobic003G362400--Sobic002G078400 Sobic003G362400--Sobic004G107600 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic005G111100 Sobic005G111100 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic003G362400--Sobic001G331900 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic006G222400--Sobic003G217100 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic010G017000 Sobic010G017000 Sobic006G222400--Sobic010G017000 Sobic008G161800 Sobic008G161800 Sobic002G263800--Sobic008G161800 Sobic007G095400 Sobic007G095400 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic010G173100 Sobic010G173100 Sobic002G263800--Sobic010G173100 Sobic002G263800--Sobic010G039800 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic001G403700 Sobic001G403700 Sobic010G008100--Sobic001G403700 Sobic010G008100--Sobic009G008600 Sobic010G008100--Sobic008G132800 Sobic009G104000 Sobic009G104000 Sobic010G008100--Sobic009G104000 Sobic003G424800 Sobic003G424800 Sobic010G008100--Sobic003G424800 Sobic010G008100--Sobic010G213400 Sobic010G008100--Sobic002G078400 Sobic010G008100--Sobic001G331900 Sobic010G008100--Sobic005G157200
Octagon: transcription factors


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