Gene annotation
Transcriptome id Sobic.010G213400.1
Synonym Sb10g026000
Functional annotation protein transport protein SEC61 subunit gamma, putative, expressed
UniProt C5Z769
Pfam PF00584
Panther DB PTHR12309
NCBI CDD KOG3498; Preprotein translocase, gamma subunit
KEGG Orthology K07342; SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
Gene Ontology GO:0016020; membrane GO:0006886intracellular protein transport GO:0006605protein targeting


Orthologs (automatic annotation)
TAIR AT5G50460 : secE/sec61-gamma protein transport protein
RAP-DB (Rice) LOC_Os02g08180.1 : protein transport protein SEC61 subunit gamma, putative, expressed
MaizeGDB (Corn) Zm00025a042020 , Zm00025a034728
Brachypodium KQK16871 , KQJ93627
Barley HORVU2Hr1G107590.1 , HORVU5Hr1G079370.2 , HORVU3Hr1G069810.2 , HORVU3Hr1G069810.1 , HORVU7Hr1G111600.2 , HORVU7Hr1G111600.3 , HORVU7Hr1G111600.1 , HORVU7Hr1G111600.4 , HORVU1Hr1G027460.1 , HORVU5Hr1G087890.1 , HORVU6Hr1G030000.1 , HORVU2Hr1G107610.1
Wheat TraesCS6B02G228700 , TraesCS1B02G151100 , TraesCS5A02G299000 , TraesCS7B02G304300 , TraesCS1A02G312100 , TraesCS7D02G486200 , TraesCS7A02G525300 , TraesCS1A02G022600 , TraesCS6B02G178700 , TraesCS2A02G337500 , TraesCS1A02G343100 , TraesCS7A02G499400 , TraesCS2A02G055100 , TraesCS1B02G433900 , TraesCS7B02G406300 , TraesCS6D02G140600 , TraesCS2A02G356100 , TraesCS6A02G150600 , TraesCS1A02G215200 , TraesCSU02G268100 , TraesCS7A02G455100 , TraesCS2B02G001300 , TraesCSU02G220500
Populus PNT57929


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cDNA sequences
Sobic.010G213400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G368500 Yip1 domain containing protein, expressed -
2 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
3 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
4 Sobic.004G284500 ORM1, putative, expressed -
5 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
6 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
7 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
8 Sobic.001G445800 expressed protein -
9 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
10 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
11 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
12 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
13 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
14 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
15 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
16 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
17 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
18 Sobic.006G182100 ORM1, putative, expressed -
19 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
20 Sobic.008G161000 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic010G213400 Sobic010G213400 Sobic003G368500 Sobic003G368500 Sobic010G213400--Sobic003G368500 Sobic003G249800 Sobic003G249800 Sobic010G213400--Sobic003G249800 Sobic009G033700 Sobic009G033700 Sobic010G213400--Sobic009G033700 Sobic004G284500 Sobic004G284500 Sobic010G213400--Sobic004G284500 Sobic010G163600 Sobic010G163600 Sobic010G213400--Sobic010G163600 Sobic001G224400 Sobic001G224400 Sobic010G213400--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic010G213400--Sobic006G062800 Sobic001G445800 Sobic001G445800 Sobic010G213400--Sobic001G445800 Sobic010G153100 Sobic010G153100 Sobic010G213400--Sobic010G153100 Sobic003G368500--Sobic010G213400 Sobic010G018400 Sobic010G018400 Sobic003G368500--Sobic010G018400 Sobic003G368500--Sobic001G224400 Sobic003G155400 Sobic003G155400 Sobic003G368500--Sobic003G155400 Sobic004G310300 Sobic004G310300 Sobic003G368500--Sobic004G310300 Sobic003G368500--Sobic004G284500 Sobic005G188100 Sobic005G188100 Sobic003G368500--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic003G368500--Sobic007G051000 Sobic001G418900 Sobic001G418900 Sobic003G368500--Sobic001G418900 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic003G249800--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500 Sobic010G086200 Sobic010G086200 Sobic009G033700--Sobic010G086200 Sobic003G037800 Sobic003G037800 Sobic009G033700--Sobic003G037800 Sobic001G281400 Sobic001G281400 Sobic009G033700--Sobic001G281400 Sobic009G033700--Sobic003G249800 Sobic007G198100 Sobic007G198100 Sobic009G033700--Sobic007G198100 Sobic009G129000 Sobic009G129000 Sobic009G033700--Sobic009G129000 Sobic002G245100 Sobic002G245100 Sobic009G033700--Sobic002G245100 Sobic009G033700--Sobic009G143400 Sobic004G065500 Sobic004G065500 Sobic009G033700--Sobic004G065500 Sobic004G284500--Sobic010G213400 Sobic006G182100 Sobic006G182100 Sobic004G284500--Sobic006G182100 Sobic009G111600 Sobic009G111600 Sobic004G284500--Sobic009G111600 Sobic002G153500 Sobic002G153500 Sobic004G284500--Sobic002G153500 Sobic004G272800 Sobic004G272800 Sobic004G284500--Sobic004G272800 Sobic004G284500--Sobic003G368500 Sobic004G284500--Sobic009G033700 Sobic004G284500--Sobic001G445800 Sobic004G284500--Sobic001G281400 Sobic010G163600--Sobic010G213400 Sobic006G141500 Sobic006G141500 Sobic010G163600--Sobic006G141500 Sobic004G300900 Sobic004G300900 Sobic010G163600--Sobic004G300900 Sobic003G362400 Sobic003G362400 Sobic010G163600--Sobic003G362400 Sobic010G163600--Sobic004G284500 Sobic010G163600--Sobic001G445800 Sobic010G163600--Sobic002G046100 Sobic010G163600--Sobic003G249800 Sobic002G078400 Sobic002G078400 Sobic010G163600--Sobic002G078400 Sobic001G224400--Sobic003G368500 Sobic001G224400--Sobic003G155400 Sobic001G224400--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic001G224400--Sobic010G154700 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic006G062800--Sobic010G213400 Sobic006G062800--Sobic003G249800 Sobic003G285800 Sobic003G285800 Sobic006G062800--Sobic003G285800 Sobic007G059900 Sobic007G059900 Sobic006G062800--Sobic007G059900 Sobic006G062800--Sobic009G129000 Sobic002G218000 Sobic002G218000 Sobic006G062800--Sobic002G218000 Sobic002G202300 Sobic002G202300 Sobic006G062800--Sobic002G202300 Sobic006G062800--Sobic009G033700 Sobic002G261900 Sobic002G261900 Sobic006G062800--Sobic002G261900 Sobic008G129400 Sobic008G129400 Sobic001G445800--Sobic008G129400 Sobic003G321700 Sobic003G321700 Sobic001G445800--Sobic003G321700 Sobic001G445800--Sobic002G078400 Sobic001G445800--Sobic003G249800 Sobic001G445800--Sobic002G046100 Sobic001G445800--Sobic010G018400 Sobic001G445800--Sobic010G154700 Sobic001G019900 Sobic001G019900 Sobic001G445800--Sobic001G019900 Sobic002G190900 Sobic002G190900 Sobic001G445800--Sobic002G190900 Sobic001G084900 Sobic001G084900 Sobic010G153100--Sobic001G084900 Sobic010G153100--Sobic001G224400 Sobic010G153100--Sobic003G155400 Sobic010G153100--Sobic001G445800 Sobic010G153100--Sobic010G154700 Sobic010G153100--Sobic010G213400 Sobic007G115100 Sobic007G115100 Sobic010G153100--Sobic007G115100 Sobic001G067601 Sobic001G067601 Sobic010G153100--Sobic001G067601 Sobic010G153100--Sobic006G141500
Octagon: transcription factors


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