Gene annotation
Transcriptome id Sobic.003G321700.1
Synonym Sb03g036840
Functional annotation KH domain containing protein, putative, expressed
UniProt C5XMC6 , Q6VBQ7
Pfam PF00013
Panther DB PTHR12826
NCBI CDD KOG3273; Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly
KEGG Orthology K11884; PNO1, RNA-binding protein PNO1
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G13230 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os03g02420.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027239 , Zm00025a039870
Brachypodium KQK10132
Barley -
Wheat TraesCS3A02G152000 , TraesCS3D02G159900 , TraesCS3B02G179200
Populus -


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cDNA sequences
Sobic.003G321700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
2 Sobic.010G260100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
3 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
4 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
5 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
6 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
7 Sobic.004G145801 - K02978: RP-S27e, small subunit ribosomal protein S27e
8 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
9 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
10 Sobic.006G211200 expressed protein -
11 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
12 Sobic.005G195301 - K02980: RP-S29e, small subunit ribosomal protein S29e
13 Sobic.004G152700 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
14 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
15 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
16 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
17 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
18 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
19 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
20 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e


Gene co-expression network
sample Sobic003G321700 Sobic003G321700 Sobic007G212600 Sobic007G212600 Sobic003G321700--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic003G321700--Sobic010G260100 Sobic001G091801 Sobic001G091801 Sobic003G321700--Sobic001G091801 Sobic007G190800 Sobic007G190800 Sobic003G321700--Sobic007G190800 Sobic003G322400 Sobic003G322400 Sobic003G321700--Sobic003G322400 Sobic010G259900 Sobic010G259900 Sobic003G321700--Sobic010G259900 Sobic004G145801 Sobic004G145801 Sobic003G321700--Sobic004G145801 Sobic006G147000 Sobic006G147000 Sobic003G321700--Sobic006G147000 Sobic004G104100 Sobic004G104100 Sobic003G321700--Sobic004G104100 Sobic007G212600--Sobic001G091801 Sobic007G212600--Sobic003G322400 Sobic001G374700 Sobic001G374700 Sobic007G212600--Sobic001G374700 Sobic009G166500 Sobic009G166500 Sobic007G212600--Sobic009G166500 Sobic001G016400 Sobic001G016400 Sobic007G212600--Sobic001G016400 Sobic007G212600--Sobic003G321700 Sobic007G212600--Sobic004G104100 Sobic007G212600--Sobic010G260100 Sobic009G050300 Sobic009G050300 Sobic007G212600--Sobic009G050300 Sobic010G260100--Sobic010G259900 Sobic010G260100--Sobic007G212600 Sobic010G260100--Sobic003G321700 Sobic004G104300 Sobic004G104300 Sobic010G260100--Sobic004G104300 Sobic010G260100--Sobic003G322400 Sobic001G046300 Sobic001G046300 Sobic010G260100--Sobic001G046300 Sobic010G260100--Sobic001G091801 Sobic004G103800 Sobic004G103800 Sobic010G260100--Sobic004G103800 Sobic001G046100 Sobic001G046100 Sobic010G260100--Sobic001G046100 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic010G230700 Sobic010G230700 Sobic007G190800--Sobic010G230700 Sobic007G190800--Sobic005G019700 Sobic007G190800--Sobic004G104100 Sobic007G190800--Sobic009G050300 Sobic007G190800--Sobic004G104300 Sobic007G019000 Sobic007G019000 Sobic007G190800--Sobic007G019000 Sobic007G018300 Sobic007G018300 Sobic007G190800--Sobic007G018300 Sobic007G190800--Sobic007G212600 Sobic001G403500 Sobic001G403500 Sobic007G190800--Sobic001G403500 Sobic003G322400--Sobic009G050300 Sobic003G322400--Sobic001G091801 Sobic003G322400--Sobic007G212600 Sobic006G116700 Sobic006G116700 Sobic003G322400--Sobic006G116700 Sobic001G054900 Sobic001G054900 Sobic003G322400--Sobic001G054900 Sobic003G408100 Sobic003G408100 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic010G259900--Sobic010G260100 Sobic010G259900--Sobic004G104300 Sobic010G259900--Sobic003G322400 Sobic010G259900--Sobic007G212600 Sobic010G259900--Sobic004G103800 Sobic010G259900--Sobic003G321700 Sobic010G259900--Sobic007G018300 Sobic010G259900--Sobic001G091801 Sobic010G259900--Sobic001G046300 Sobic004G145801--Sobic001G091801 Sobic004G145801--Sobic004G104100 Sobic004G145801--Sobic005G019700 Sobic004G145801--Sobic007G212600 Sobic004G145801--Sobic010G230700 Sobic004G145801--Sobic004G103800 Sobic004G280700 Sobic004G280700 Sobic004G145801--Sobic004G280700 Sobic004G145801--Sobic001G054900 Sobic004G145801--Sobic004G104300 Sobic003G346600 Sobic003G346600 Sobic006G147000--Sobic003G346600 Sobic006G147000--Sobic009G163800 Sobic010G060500 Sobic010G060500 Sobic006G147000--Sobic010G060500 Sobic006G147000--Sobic009G166500 Sobic002G081600 Sobic002G081600 Sobic006G147000--Sobic002G081600 Sobic007G178600 Sobic007G178600 Sobic006G147000--Sobic007G178600 Sobic006G147000--Sobic003G322400 Sobic006G147000--Sobic009G050300 Sobic006G147000--Sobic007G212600 Sobic004G104100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic010G166100 Sobic010G166100 Sobic004G104100--Sobic010G166100 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic004G104100--Sobic009G166500 Sobic004G104100--Sobic009G050300
Octagon: transcription factors


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