Gene annotation
Transcriptome id Sobic.003G285800.1
Synonym Sb03g033670
Functional annotation ubiquitin domain-containing protein 1, putative, expressed
UniProt C5XJ26
Pfam PF16455
Panther DB PTHR13609
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53400 : Ubiquitin domain-containing protein
RAP-DB (Rice) LOC_Os09g17620.1 : ubiquitin domain-containing protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a027706
Brachypodium -
Barley -
Wheat TraesCS1D02G352200 , TraesCS3B02G315300 , TraesCS3D02G281600 , TraesCS3D02G281600 , TraesCS3D02G281600 , TraesCS3B02G315300 , TraesCS3A02G281600 , TraesCS3A02G281600 , TraesCS3A02G281600 , TraesCS1B02G363900 , TraesCS1B02G363900 , TraesCS1A02G349000
Populus -


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cDNA sequences
Sobic.003G285800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
2 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
3 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -
4 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
5 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
6 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
7 Sobic.001G281400 expressed protein -
8 Sobic.010G086200 GRAM domain containing protein, expressed -
9 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
10 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
11 Sobic.008G185400 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
12 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
13 Sobic.002G190900 expressed protein -
14 Sobic.007G087200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.010G041600 profilin domain containing protein, expressed K05759: profilin
16 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
17 Sobic.001G107400 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
19 Sobic.004G157000 protein kinase domain containing protein, expressed K13430: serine/threonine-protein kinase PBS1
20 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic003G285800 Sobic003G285800 Sobic002G046100 Sobic002G046100 Sobic003G285800--Sobic002G046100 Sobic002G187500 Sobic002G187500 Sobic003G285800--Sobic002G187500 Sobic010G178200 Sobic010G178200 Sobic003G285800--Sobic010G178200 Sobic003G350300 Sobic003G350300 Sobic003G285800--Sobic003G350300 Sobic002G345300 Sobic002G345300 Sobic003G285800--Sobic002G345300 Sobic001G477300 Sobic001G477300 Sobic003G285800--Sobic001G477300 Sobic001G281400 Sobic001G281400 Sobic003G285800--Sobic001G281400 Sobic010G086200 Sobic010G086200 Sobic003G285800--Sobic010G086200 Sobic009G129000 Sobic009G129000 Sobic003G285800--Sobic009G129000 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic002G046100--Sobic001G477300 Sobic002G267500 Sobic002G267500 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic010G178200--Sobic002G345300 Sobic010G178200--Sobic003G285800 Sobic010G178200--Sobic003G350300 Sobic010G041600 Sobic010G041600 Sobic010G178200--Sobic010G041600 Sobic001G034700 Sobic001G034700 Sobic010G178200--Sobic001G034700 Sobic010G178200--Sobic001G281400 Sobic010G178200--Sobic002G046100 Sobic010G274900 Sobic010G274900 Sobic010G178200--Sobic010G274900 Sobic007G087200 Sobic007G087200 Sobic010G178200--Sobic007G087200 Sobic004G187900 Sobic004G187900 Sobic003G350300--Sobic004G187900 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G350300--Sobic003G285800 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic003G350300--Sobic010G274900 Sobic003G350300--Sobic010G086200 Sobic003G181500 Sobic003G181500 Sobic003G350300--Sobic003G181500 Sobic002G345300--Sobic002G046100 Sobic002G345300--Sobic003G350300 Sobic002G345300--Sobic001G281400 Sobic002G345300--Sobic010G178200 Sobic002G345300--Sobic002G267500 Sobic003G253000 Sobic003G253000 Sobic002G345300--Sobic003G253000 Sobic002G345300--Sobic003G285800 Sobic004G272800 Sobic004G272800 Sobic002G345300--Sobic004G272800 Sobic010G149300 Sobic010G149300 Sobic002G345300--Sobic010G149300 Sobic001G124600 Sobic001G124600 Sobic001G477300--Sobic001G124600 Sobic001G477300--Sobic004G187900 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic006G267200 Sobic006G267200 Sobic001G477300--Sobic006G267200 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic004G065500 Sobic004G065500 Sobic001G477300--Sobic004G065500 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic010G086200--Sobic006G267200 Sobic010G086200--Sobic004G065500 Sobic010G086200--Sobic004G321300 Sobic010G086200--Sobic009G141800 Sobic010G086200--Sobic009G129000 Sobic009G143400 Sobic009G143400 Sobic010G086200--Sobic009G143400 Sobic001G459800 Sobic001G459800 Sobic010G086200--Sobic001G459800 Sobic009G033700 Sobic009G033700 Sobic010G086200--Sobic009G033700 Sobic003G393900 Sobic003G393900 Sobic010G086200--Sobic003G393900 Sobic009G129000--Sobic010G086200 Sobic005G028700 Sobic005G028700 Sobic009G129000--Sobic005G028700 Sobic009G183300 Sobic009G183300 Sobic009G129000--Sobic009G183300 Sobic009G129000--Sobic009G033700 Sobic009G200700 Sobic009G200700 Sobic009G129000--Sobic009G200700 Sobic009G129000--Sobic004G065500 Sobic010G217800 Sobic010G217800 Sobic009G129000--Sobic010G217800 Sobic009G129000--Sobic006G267200 Sobic010G204600 Sobic010G204600 Sobic009G129000--Sobic010G204600
Octagon: transcription factors


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