Gene annotation
Transcriptome id Sobic.003G368500.1
Synonym Sb03g040990
Functional annotation Yip1 domain containing protein, expressed
UniProt C5XQN4
Pfam PF04893
Panther DB PTHR21236 PTHR21236:SF9
NCBI CDD KOG2946; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT2G18840 : Integral membrane Yip1 family protein
RAP-DB (Rice) LOC_Os01g64760.1 : Yip1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039560 , Zm00025a026697
Brachypodium KQK10775 , PNT71177 , PNT71178 , KQK06057
Barley HORVU7Hr1G008630.1 , HORVU1Hr1G018050.1 , HORVU1Hr1G018050.2 , HORVU3Hr1G083180.1 , HORVU3Hr1G083180.2 , HORVU1Hr1G074970.1 , HORVU1Hr1G074970.2 , HORVU1Hr1G074970.3
Wheat TraesCS1A02G272600 , TraesCS3A02G379000 , TraesCS3D02G372500 , TraesCS3B02G411900 , TraesCS1D02G272100
Populus -


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cDNA sequences
Sobic.003G368500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
2 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
3 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
4 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
5 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
6 Sobic.004G284500 ORM1, putative, expressed -
7 Sobic.005G188100 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
8 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
9 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
11 Sobic.006G182100 ORM1, putative, expressed -
12 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
13 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
14 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
15 Sobic.001G281400 expressed protein -
16 Sobic.001G441000 erwinia induced protein 2, putative, expressed -
17 Sobic.001G445800 expressed protein -
18 Sobic.008G127500 expressed protein -
19 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
20 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3


Gene co-expression network
sample Sobic003G368500 Sobic003G368500 Sobic010G213400 Sobic010G213400 Sobic003G368500--Sobic010G213400 Sobic010G018400 Sobic010G018400 Sobic003G368500--Sobic010G018400 Sobic001G224400 Sobic001G224400 Sobic003G368500--Sobic001G224400 Sobic003G155400 Sobic003G155400 Sobic003G368500--Sobic003G155400 Sobic004G310300 Sobic004G310300 Sobic003G368500--Sobic004G310300 Sobic004G284500 Sobic004G284500 Sobic003G368500--Sobic004G284500 Sobic005G188100 Sobic005G188100 Sobic003G368500--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic003G368500--Sobic007G051000 Sobic001G418900 Sobic001G418900 Sobic003G368500--Sobic001G418900 Sobic010G213400--Sobic003G368500 Sobic003G249800 Sobic003G249800 Sobic010G213400--Sobic003G249800 Sobic009G033700 Sobic009G033700 Sobic010G213400--Sobic009G033700 Sobic010G213400--Sobic004G284500 Sobic010G163600 Sobic010G163600 Sobic010G213400--Sobic010G163600 Sobic010G213400--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic010G213400--Sobic006G062800 Sobic001G445800 Sobic001G445800 Sobic010G213400--Sobic001G445800 Sobic010G153100 Sobic010G153100 Sobic010G213400--Sobic010G153100 Sobic008G129400 Sobic008G129400 Sobic010G018400--Sobic008G129400 Sobic010G018400--Sobic003G368500 Sobic010G018400--Sobic003G155400 Sobic009G176000 Sobic009G176000 Sobic010G018400--Sobic009G176000 Sobic010G018400--Sobic007G051000 Sobic010G154700 Sobic010G154700 Sobic010G018400--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic010G018400--Sobic001G132100 Sobic001G048832 Sobic001G048832 Sobic010G018400--Sobic001G048832 Sobic010G018400--Sobic001G445800 Sobic001G224400--Sobic003G368500 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic001G224400--Sobic010G154700 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic001G224400--Sobic010G153100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic004G310300--Sobic009G119900 Sobic004G259200 Sobic004G259200 Sobic004G310300--Sobic004G259200 Sobic004G310300--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic004G310300--Sobic001G018500 Sobic004G310300--Sobic010G204500 Sobic004G310300--Sobic003G155400 Sobic004G066800 Sobic004G066800 Sobic004G310300--Sobic004G066800 Sobic001G513500 Sobic001G513500 Sobic004G310300--Sobic001G513500 Sobic004G310300--Sobic005G188100 Sobic004G284500--Sobic010G213400 Sobic006G182100 Sobic006G182100 Sobic004G284500--Sobic006G182100 Sobic009G111600 Sobic009G111600 Sobic004G284500--Sobic009G111600 Sobic004G284500--Sobic002G153500 Sobic004G272800 Sobic004G272800 Sobic004G284500--Sobic004G272800 Sobic004G284500--Sobic003G368500 Sobic004G284500--Sobic009G033700 Sobic004G284500--Sobic001G445800 Sobic001G281400 Sobic001G281400 Sobic004G284500--Sobic001G281400 Sobic002G190900 Sobic002G190900 Sobic005G188100--Sobic002G190900 Sobic009G163800 Sobic009G163800 Sobic005G188100--Sobic009G163800 Sobic002G398901 Sobic002G398901 Sobic005G188100--Sobic002G398901 Sobic005G188100--Sobic010G204500 Sobic009G166500 Sobic009G166500 Sobic005G188100--Sobic009G166500 Sobic005G188100--Sobic007G051000 Sobic006G047400 Sobic006G047400 Sobic005G188100--Sobic006G047400 Sobic010G012500 Sobic010G012500 Sobic005G188100--Sobic010G012500 Sobic004G211833 Sobic004G211833 Sobic005G188100--Sobic004G211833 Sobic007G051000--Sobic010G012500 Sobic007G051000--Sobic009G176000 Sobic007G051000--Sobic002G398901 Sobic007G051000--Sobic004G211833 Sobic007G051000--Sobic002G190900 Sobic006G083500 Sobic006G083500 Sobic007G051000--Sobic006G083500 Sobic007G051000--Sobic001G018500 Sobic007G051000--Sobic003G209000 Sobic007G051000--Sobic010G204500 Sobic007G115100 Sobic007G115100 Sobic001G418900--Sobic007G115100 Sobic003G443300 Sobic003G443300 Sobic001G418900--Sobic003G443300 Sobic004G138800 Sobic004G138800 Sobic001G418900--Sobic004G138800 Sobic001G418900--Sobic004G310300 Sobic002G257300 Sobic002G257300 Sobic001G418900--Sobic002G257300 Sobic001G418900--Sobic009G119900 Sobic001G418900--Sobic003G155400 Sobic001G418900--Sobic005G188100 Sobic005G110800 Sobic005G110800 Sobic001G418900--Sobic005G110800
Octagon: transcription factors


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