Gene annotation
Transcriptome id Sobic.009G160200.1,Sobic.009G160200.2,Sobic.009G160200.3
Synonym PRA1.A1, Sb09g022300
Functional annotation prenylated rab acceptor, putative, expressed
UniProt A0A1B6P9A5 , A0A1B6P942
Pfam PF03208
Panther DB PTHR12859
NCBI CDD KOG4050; Glutamate transporter EAAC1-interacting protein GTRAP3-18
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05987 : prenylated RAB acceptor 1.A2
RAP-DB (Rice) LOC_Os05g38160.1 : prenylated rab acceptor, putative, expressed
MaizeGDB (Corn) Zm00025a043885 , Zm00025a037181
Brachypodium KQK05942
Barley HORVU1Hr1G072730.1 , HORVU1Hr1G072730.2
Wheat TraesCS1A02G281600 , TraesCS1D02G280800 , TraesCS1B02G290700
Populus -


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cDNA sequences
Sobic.009G160200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
2 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
3 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
4 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
5 Sobic.003G217100 Yip1 domain containing protein, expressed -
6 Sobic.002G261900 arabinogalactan protein, putative, expressed -
7 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
8 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
9 Sobic.003G052400 proline-rich family protein, putative, expressed -
10 Sobic.006G263100 expressed protein -
11 Sobic.002G348600 zinc finger family protein, putative, expressed -
12 Sobic.002G214900 polygalacturonase, putative, expressed -
13 Sobic.002G378300 ADP-ribosylation factor, putative, expressed K07952: ADP-ribosylation factor related protein 1
14 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
15 Sobic.001G122500 SNARE associated Golgi protein, putative, expressed -
16 Sobic.001G408100 Yip1 domain containing protein, expressed -
17 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
18 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
19 Sobic.003G189700 thioredoxin, putative, expressed -
20 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -


Gene co-expression network
sample Sobic009G160200 Sobic009G160200 Sobic001G283500 Sobic001G283500 Sobic009G160200--Sobic001G283500 Sobic006G222400 Sobic006G222400 Sobic009G160200--Sobic006G222400 Sobic001G311100 Sobic001G311100 Sobic009G160200--Sobic001G311100 Sobic010G017000 Sobic010G017000 Sobic009G160200--Sobic010G017000 Sobic003G217100 Sobic003G217100 Sobic009G160200--Sobic003G217100 Sobic002G261900 Sobic002G261900 Sobic009G160200--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic009G160200--Sobic010G094600 Sobic003G043400 Sobic003G043400 Sobic009G160200--Sobic003G043400 Sobic003G052400 Sobic003G052400 Sobic009G160200--Sobic003G052400 Sobic008G016900 Sobic008G016900 Sobic001G283500--Sobic008G016900 Sobic007G195701 Sobic007G195701 Sobic001G283500--Sobic007G195701 Sobic001G403700 Sobic001G403700 Sobic001G283500--Sobic001G403700 Sobic003G115800 Sobic003G115800 Sobic001G283500--Sobic003G115800 Sobic001G283500--Sobic009G160200 Sobic010G204300 Sobic010G204300 Sobic001G283500--Sobic010G204300 Sobic002G296300 Sobic002G296300 Sobic001G283500--Sobic002G296300 Sobic010G062800 Sobic010G062800 Sobic001G283500--Sobic010G062800 Sobic010G188100 Sobic010G188100 Sobic001G283500--Sobic010G188100 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic006G222400--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic006G222400--Sobic010G017000 Sobic001G311100--Sobic002G261900 Sobic001G311100--Sobic010G094600 Sobic001G311100--Sobic009G160200 Sobic001G311100--Sobic003G043400 Sobic010G026700 Sobic010G026700 Sobic001G311100--Sobic010G026700 Sobic001G311100--Sobic001G283500 Sobic001G311100--Sobic010G188100 Sobic001G311100--Sobic010G017000 Sobic002G083266 Sobic002G083266 Sobic001G311100--Sobic002G083266 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic010G017000--Sobic003G052400 Sobic010G017000--Sobic009G160200 Sobic003G038600 Sobic003G038600 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic001G237500 Sobic001G237500 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic006G062800 Sobic006G062800 Sobic002G261900--Sobic006G062800 Sobic002G261900--Sobic007G059900 Sobic002G261900--Sobic002G083266 Sobic002G261900--Sobic001G311100 Sobic001G066700 Sobic001G066700 Sobic002G261900--Sobic001G066700 Sobic002G261900--Sobic003G043400 Sobic002G261900--Sobic010G204300 Sobic009G070200 Sobic009G070200 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic010G094600--Sobic001G311100 Sobic010G094600--Sobic009G160200 Sobic010G094600--Sobic003G052400 Sobic001G516100 Sobic001G516100 Sobic010G094600--Sobic001G516100 Sobic007G006600 Sobic007G006600 Sobic010G094600--Sobic007G006600 Sobic010G094600--Sobic001G283500 Sobic002G348600 Sobic002G348600 Sobic010G094600--Sobic002G348600 Sobic010G094600--Sobic002G261900 Sobic010G094600--Sobic002G083266 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic003G043400--Sobic002G428200 Sobic003G043400--Sobic008G137600 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic003G043400--Sobic006G222400 Sobic003G052400--Sobic010G017000 Sobic003G052400--Sobic001G408100 Sobic003G052400--Sobic002G348600 Sobic003G052400--Sobic001G067900 Sobic008G003600 Sobic008G003600 Sobic003G052400--Sobic008G003600 Sobic003G052400--Sobic003G217100 Sobic003G052400--Sobic009G160200 Sobic006G257001 Sobic006G257001 Sobic003G052400--Sobic006G257001 Sobic003G052400--Sobic001G237500
Octagon: transcription factors


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