Gene annotation
Transcriptome id Sobic.003G052400.1
Synonym Sb03g004550
Functional annotation proline-rich family protein, putative, expressed
UniProt A0A1B6Q1G2
Pfam PF07223
Panther DB PTHR31805 PTHR31805:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01560 : Protein of unknown function (DUF1421)
RAP-DB (Rice) LOC_Os01g07520.1 : proline-rich family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023265 , Zm00025a035715
Brachypodium KQK02888 , KQK07299
Barley HORVU3Hr1G016420.4 , HORVU3Hr1G016420.5 , HORVU3Hr1G016420.6 , HORVU3Hr1G016420.1 , HORVU3Hr1G016420.2 , HORVU3Hr1G016420.3 , HORVU3Hr1G016420.8
Wheat TraesCS1A02G113700 , TraesCS3B02G108100 , TraesCS3A02G092900 , TraesCS3D02G093200 , TraesCS1D02G115300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
2 Sobic.001G408100 Yip1 domain containing protein, expressed -
3 Sobic.002G348600 zinc finger family protein, putative, expressed -
4 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
5 Sobic.008G003600 PMR5, putative, expressed -
6 Sobic.003G217100 Yip1 domain containing protein, expressed -
7 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
8 Sobic.006G257001 - -
9 Sobic.001G237500 transporter family protein, putative, expressed -
10 Sobic.003G030800 prenylated rab acceptor, putative, expressed -
11 Sobic.001G105100 neighbor of COX4, putative, expressed -
12 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
13 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G131900 expressed protein -
15 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
16 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
17 Sobic.007G148700 exo70 exocyst complex subunit, putative, expressed -
18 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
19 Sobic.006G207500 expressed protein -
20 Sobic.006G183000 RING zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic003G052400 Sobic003G052400 Sobic010G017000 Sobic010G017000 Sobic003G052400--Sobic010G017000 Sobic001G408100 Sobic001G408100 Sobic003G052400--Sobic001G408100 Sobic002G348600 Sobic002G348600 Sobic003G052400--Sobic002G348600 Sobic001G067900 Sobic001G067900 Sobic003G052400--Sobic001G067900 Sobic008G003600 Sobic008G003600 Sobic003G052400--Sobic008G003600 Sobic003G217100 Sobic003G217100 Sobic003G052400--Sobic003G217100 Sobic009G160200 Sobic009G160200 Sobic003G052400--Sobic009G160200 Sobic006G257001 Sobic006G257001 Sobic003G052400--Sobic006G257001 Sobic001G237500 Sobic001G237500 Sobic003G052400--Sobic001G237500 Sobic006G222400 Sobic006G222400 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic010G017000--Sobic003G052400 Sobic010G017000--Sobic009G160200 Sobic003G038600 Sobic003G038600 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic001G283500 Sobic001G283500 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic001G408100--Sobic003G217100 Sobic001G408100--Sobic003G052400 Sobic009G171100 Sobic009G171100 Sobic001G408100--Sobic009G171100 Sobic001G408100--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic001G408100--Sobic003G043400 Sobic001G408100--Sobic006G222400 Sobic001G214200 Sobic001G214200 Sobic001G408100--Sobic001G214200 Sobic004G025300 Sobic004G025300 Sobic001G408100--Sobic004G025300 Sobic001G408100--Sobic003G038600 Sobic002G348600--Sobic003G052400 Sobic001G323000 Sobic001G323000 Sobic002G348600--Sobic001G323000 Sobic002G348600--Sobic009G160200 Sobic001G005600 Sobic001G005600 Sobic002G348600--Sobic001G005600 Sobic001G206900 Sobic001G206900 Sobic002G348600--Sobic001G206900 Sobic001G015800 Sobic001G015800 Sobic002G348600--Sobic001G015800 Sobic001G105500 Sobic001G105500 Sobic002G348600--Sobic001G105500 Sobic010G094600 Sobic010G094600 Sobic002G348600--Sobic010G094600 Sobic001G311100 Sobic001G311100 Sobic002G348600--Sobic001G311100 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G067900--Sobic001G237500 Sobic008G003600--Sobic003G052400 Sobic009G229300 Sobic009G229300 Sobic008G003600--Sobic009G229300 Sobic001G145500 Sobic001G145500 Sobic008G003600--Sobic001G145500 Sobic010G008100 Sobic010G008100 Sobic008G003600--Sobic010G008100 Sobic008G003600--Sobic006G034800 Sobic002G342500 Sobic002G342500 Sobic008G003600--Sobic002G342500 Sobic008G003600--Sobic001G408100 Sobic003G030800 Sobic003G030800 Sobic008G003600--Sobic003G030800 Sobic009G168000 Sobic009G168000 Sobic008G003600--Sobic009G168000 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic003G217100--Sobic001G237500 Sobic003G217100--Sobic001G408100 Sobic009G160200--Sobic001G283500 Sobic009G160200--Sobic006G222400 Sobic009G160200--Sobic001G311100 Sobic009G160200--Sobic010G017000 Sobic009G160200--Sobic003G217100 Sobic002G261900 Sobic002G261900 Sobic009G160200--Sobic002G261900 Sobic009G160200--Sobic010G094600 Sobic009G160200--Sobic003G043400 Sobic009G160200--Sobic003G052400 Sobic006G257001--Sobic001G067900 Sobic006G257001--Sobic006G034800 Sobic006G257001--Sobic001G105100 Sobic006G257001--Sobic001G237500 Sobic001G041200 Sobic001G041200 Sobic006G257001--Sobic001G041200 Sobic002G131900 Sobic002G131900 Sobic006G257001--Sobic002G131900 Sobic010G105600 Sobic010G105600 Sobic006G257001--Sobic010G105600 Sobic006G257001--Sobic003G217100 Sobic002G301300 Sobic002G301300 Sobic006G257001--Sobic002G301300 Sobic001G237500--Sobic010G105600 Sobic001G237500--Sobic006G257001 Sobic001G237500--Sobic001G105100 Sobic001G237500--Sobic001G067900 Sobic001G237500--Sobic003G217100 Sobic004G222600 Sobic004G222600 Sobic001G237500--Sobic004G222600 Sobic001G237500--Sobic002G131900 Sobic001G237500--Sobic003G052400 Sobic004G132300 Sobic004G132300 Sobic001G237500--Sobic004G132300
Octagon: transcription factors


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