Gene annotation
Transcriptome id Sobic.006G263100.1,Sobic.006G263100.2
Synonym Sb06g032590
Functional annotation expressed protein
UniProt A0A1Z5RGK5 , C5YA62
Pfam PF10058
Panther DB PTHR22166 PTHR22166:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G31080 : Protein of unknown function (DUF2296)
RAP-DB (Rice) LOC_Os04g57690.1 : expressed protein
MaizeGDB (Corn) Zm00025a009348
Brachypodium KQJ85249 , KQJ85248 , PNT62119
Barley HORVU0Hr1G012090.1 , HORVU5Hr1G069590.1 , HORVU2Hr1G120590.3 , HORVU2Hr1G120590.2 , HORVU2Hr1G120590.1 , HORVU2Hr1G023780.1
Wheat TraesCS2B02G581600 , TraesCS2B02G581600
Populus -


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cDNA sequences
Sobic.006G263100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
2 Sobic.010G246000 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.001G290400 no apical meristem protein, putative, expressed -
4 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
5 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
6 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
7 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
8 Sobic.010G228000 Protein kinase domain containing protein, expressed -
9 Sobic.001G409900 transporter, putative, expressed -
10 Sobic.003G338900 expressed protein -
11 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G052800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
13 Sobic.010G204300 expressed protein -
14 Sobic.001G051800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBDUF18 - F-box and DUF domain containing protein, expressed -
15 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
16 Sobic.004G278000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
17 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
18 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
19 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
20 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -


Gene co-expression network
sample Sobic006G263100 Sobic006G263100 Sobic004G280800 Sobic004G280800 Sobic006G263100--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic006G263100--Sobic010G246000 Sobic001G290400 Sobic001G290400 Sobic006G263100--Sobic001G290400 Sobic002G379400 Sobic002G379400 Sobic006G263100--Sobic002G379400 Sobic002G330300 Sobic002G330300 Sobic006G263100--Sobic002G330300 Sobic001G147200 Sobic001G147200 Sobic006G263100--Sobic001G147200 Sobic002G294700 Sobic002G294700 Sobic006G263100--Sobic002G294700 Sobic010G228000 Sobic010G228000 Sobic006G263100--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic006G263100--Sobic001G409900 Sobic004G280800--Sobic010G228000 Sobic004G280800--Sobic006G263100 Sobic002G118600 Sobic002G118600 Sobic004G280800--Sobic002G118600 Sobic004G280800--Sobic001G290400 Sobic003G338900 Sobic003G338900 Sobic004G280800--Sobic003G338900 Sobic004G025000 Sobic004G025000 Sobic004G280800--Sobic004G025000 Sobic007G011000 Sobic007G011000 Sobic004G280800--Sobic007G011000 Sobic004G053200 Sobic004G053200 Sobic004G280800--Sobic004G053200 Sobic001G189700 Sobic001G189700 Sobic004G280800--Sobic001G189700 Sobic010G246000--Sobic002G294700 Sobic002G374100 Sobic002G374100 Sobic010G246000--Sobic002G374100 Sobic003G019200 Sobic003G019200 Sobic010G246000--Sobic003G019200 Sobic010G246000--Sobic001G147200 Sobic010G245800 Sobic010G245800 Sobic010G246000--Sobic010G245800 Sobic008G177800 Sobic008G177800 Sobic010G246000--Sobic008G177800 Sobic002G354900 Sobic002G354900 Sobic010G246000--Sobic002G354900 Sobic010G234600 Sobic010G234600 Sobic010G246000--Sobic010G234600 Sobic004G036600 Sobic004G036600 Sobic010G246000--Sobic004G036600 Sobic001G290400--Sobic002G118600 Sobic001G290400--Sobic002G294700 Sobic001G051800 Sobic001G051800 Sobic001G290400--Sobic001G051800 Sobic001G290400--Sobic004G053200 Sobic001G290400--Sobic003G338900 Sobic001G473900 Sobic001G473900 Sobic001G290400--Sobic001G473900 Sobic001G290400--Sobic010G228000 Sobic005G139700 Sobic005G139700 Sobic001G290400--Sobic005G139700 Sobic001G538866 Sobic001G538866 Sobic001G290400--Sobic001G538866 Sobic002G379400--Sobic004G025000 Sobic002G379400--Sobic002G330300 Sobic002G379400--Sobic003G338900 Sobic008G016900 Sobic008G016900 Sobic002G379400--Sobic008G016900 Sobic002G379400--Sobic010G228000 Sobic002G379400--Sobic002G118600 Sobic002G379400--Sobic006G263100 Sobic001G436000 Sobic001G436000 Sobic002G379400--Sobic001G436000 Sobic002G379400--Sobic002G294700 Sobic002G330300--Sobic008G016900 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic002G330300--Sobic010G228000 Sobic002G330300--Sobic007G011000 Sobic002G330300--Sobic004G025000 Sobic002G330300--Sobic002G118600 Sobic002G330300--Sobic006G263100 Sobic007G188100 Sobic007G188100 Sobic002G330300--Sobic007G188100 Sobic001G147200--Sobic003G019200 Sobic001G147200--Sobic010G246000 Sobic001G147200--Sobic002G118600 Sobic010G204300 Sobic010G204300 Sobic001G147200--Sobic010G204300 Sobic006G228300 Sobic006G228300 Sobic001G147200--Sobic006G228300 Sobic001G399100 Sobic001G399100 Sobic001G147200--Sobic001G399100 Sobic001G147200--Sobic001G538866 Sobic001G147200--Sobic002G374100 Sobic001G147200--Sobic006G263100 Sobic002G294700--Sobic008G177800 Sobic002G294700--Sobic010G234600 Sobic006G231100 Sobic006G231100 Sobic002G294700--Sobic006G231100 Sobic002G294700--Sobic002G374100 Sobic004G286600 Sobic004G286600 Sobic002G294700--Sobic004G286600 Sobic001G077700 Sobic001G077700 Sobic002G294700--Sobic001G077700 Sobic002G294700--Sobic010G246000 Sobic002G294700--Sobic004G036600 Sobic002G278500 Sobic002G278500 Sobic002G294700--Sobic002G278500 Sobic010G228000--Sobic002G374100 Sobic010G228000--Sobic002G118600 Sobic010G228000--Sobic007G188100 Sobic010G228000--Sobic002G294700 Sobic010G228000--Sobic002G330300 Sobic010G228000--Sobic004G280800 Sobic010G228000--Sobic010G246000 Sobic010G228000--Sobic002G379400 Sobic010G228000--Sobic001G290400 Sobic002G214900 Sobic002G214900 Sobic001G409900--Sobic002G214900 Sobic001G409900--Sobic006G263100 Sobic001G173300 Sobic001G173300 Sobic001G409900--Sobic001G173300 Sobic004G278000 Sobic004G278000 Sobic001G409900--Sobic004G278000 Sobic009G208800 Sobic009G208800 Sobic001G409900--Sobic009G208800 Sobic002G362900 Sobic002G362900 Sobic001G409900--Sobic002G362900 Sobic001G409900--Sobic007G188100 Sobic001G122500 Sobic001G122500 Sobic001G409900--Sobic001G122500 Sobic003G023500 Sobic003G023500 Sobic001G409900--Sobic003G023500
Octagon: transcription factors


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