Gene annotation
Transcriptome id Sobic.004G278000.1,Sobic.004G278000.2
Synonym Sb04g031490
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5RPC4 , C5Y0V0
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF121
NCBI CDD KOG1100; Predicted E3 ubiquitin ligase
KEGG Orthology K19042; E3 ubiquitin-protein ligase BOI and related proteins
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32740 : SBP (S-ribonuclease binding protein) family protein
RAP-DB (Rice) LOC_Os02g46220.1 : expressed protein
MaizeGDB (Corn) Zm00025a035604 , Zm00025a021570 , Zm00025a032348
Brachypodium KQK00821
Barley HORVU6Hr1G066640.2 , HORVU6Hr1G066640.3 , HORVU6Hr1G066640.1 , HORVU6Hr1G066640.4
Wheat TraesCS6D02G243000 , TraesCS6A02G262200 , TraesCS6B02G289500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G409900 transporter, putative, expressed -
2 Sobic.006G263100 expressed protein -
3 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
4 Sobic.008G129000 phosphatidic acid phosphatase-related, putative, expressed -
5 Sobic.004G259500 expressed protein -
6 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
7 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
8 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
9 Sobic.003G392200 CXE carboxylesterase, putative, expressed -
10 Sobic.001G290400 no apical meristem protein, putative, expressed -
11 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
12 Sobic.003G296700 protein kinase domain containing protein, expressed -
13 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
14 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
15 Sobic.001G482700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
16 Sobic.004G323600 "SMG1(Ortholog in rice:Duan et al., 2014)"(PubMedID : 31659892)@STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13413: mitogen-activated protein kinase kinase 4/5
17 Sobic.009G169400 expressed protein -
18 Sobic.005G139700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
19 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
20 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -


Gene co-expression network
sample Sobic004G278000 Sobic004G278000 Sobic001G409900 Sobic001G409900 Sobic004G278000--Sobic001G409900 Sobic006G263100 Sobic006G263100 Sobic004G278000--Sobic006G263100 Sobic002G118600 Sobic002G118600 Sobic004G278000--Sobic002G118600 Sobic008G129000 Sobic008G129000 Sobic004G278000--Sobic008G129000 Sobic004G259500 Sobic004G259500 Sobic004G278000--Sobic004G259500 Sobic009G171100 Sobic009G171100 Sobic004G278000--Sobic009G171100 Sobic004G280800 Sobic004G280800 Sobic004G278000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic004G278000--Sobic003G425200 Sobic003G392200 Sobic003G392200 Sobic004G278000--Sobic003G392200 Sobic002G214900 Sobic002G214900 Sobic001G409900--Sobic002G214900 Sobic001G409900--Sobic006G263100 Sobic001G173300 Sobic001G173300 Sobic001G409900--Sobic001G173300 Sobic001G409900--Sobic004G278000 Sobic009G208800 Sobic009G208800 Sobic001G409900--Sobic009G208800 Sobic002G362900 Sobic002G362900 Sobic001G409900--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic001G409900--Sobic007G188100 Sobic001G122500 Sobic001G122500 Sobic001G409900--Sobic001G122500 Sobic003G023500 Sobic003G023500 Sobic001G409900--Sobic003G023500 Sobic006G263100--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic006G263100--Sobic010G246000 Sobic001G290400 Sobic001G290400 Sobic006G263100--Sobic001G290400 Sobic002G379400 Sobic002G379400 Sobic006G263100--Sobic002G379400 Sobic002G330300 Sobic002G330300 Sobic006G263100--Sobic002G330300 Sobic001G147200 Sobic001G147200 Sobic006G263100--Sobic001G147200 Sobic002G294700 Sobic002G294700 Sobic006G263100--Sobic002G294700 Sobic010G228000 Sobic010G228000 Sobic006G263100--Sobic010G228000 Sobic006G263100--Sobic001G409900 Sobic002G118600--Sobic001G147200 Sobic001G341600 Sobic001G341600 Sobic002G118600--Sobic001G341600 Sobic003G341100 Sobic003G341100 Sobic002G118600--Sobic003G341100 Sobic002G118600--Sobic010G228000 Sobic002G374100 Sobic002G374100 Sobic002G118600--Sobic002G374100 Sobic002G118600--Sobic001G290400 Sobic007G011000 Sobic007G011000 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic001G308700 Sobic001G308700 Sobic008G129000--Sobic001G308700 Sobic001G284400 Sobic001G284400 Sobic008G129000--Sobic001G284400 Sobic001G513300 Sobic001G513300 Sobic008G129000--Sobic001G513300 Sobic008G129000--Sobic004G278000 Sobic002G183400 Sobic002G183400 Sobic008G129000--Sobic002G183400 Sobic006G230400 Sobic006G230400 Sobic008G129000--Sobic006G230400 Sobic004G268200 Sobic004G268200 Sobic008G129000--Sobic004G268200 Sobic004G228700 Sobic004G228700 Sobic008G129000--Sobic004G228700 Sobic003G273000 Sobic003G273000 Sobic008G129000--Sobic003G273000 Sobic004G259500--Sobic007G188100 Sobic004G259500--Sobic009G171100 Sobic002G353400 Sobic002G353400 Sobic004G259500--Sobic002G353400 Sobic004G259500--Sobic003G425200 Sobic003G294400 Sobic003G294400 Sobic004G259500--Sobic003G294400 Sobic001G525400 Sobic001G525400 Sobic004G259500--Sobic001G525400 Sobic004G259500--Sobic002G379400 Sobic008G016900 Sobic008G016900 Sobic004G259500--Sobic008G016900 Sobic004G259500--Sobic004G278000 Sobic009G171100--Sobic001G525400 Sobic001G441000 Sobic001G441000 Sobic009G171100--Sobic001G441000 Sobic003G253500 Sobic003G253500 Sobic009G171100--Sobic003G253500 Sobic009G171100--Sobic004G259500 Sobic001G408100 Sobic001G408100 Sobic009G171100--Sobic001G408100 Sobic009G171100--Sobic007G188100 Sobic009G171100--Sobic002G353400 Sobic009G171100--Sobic003G392200 Sobic009G182200 Sobic009G182200 Sobic009G171100--Sobic009G182200 Sobic004G280800--Sobic010G228000 Sobic004G280800--Sobic006G263100 Sobic004G280800--Sobic002G118600 Sobic004G280800--Sobic001G290400 Sobic003G338900 Sobic003G338900 Sobic004G280800--Sobic003G338900 Sobic004G025000 Sobic004G025000 Sobic004G280800--Sobic004G025000 Sobic004G280800--Sobic007G011000 Sobic004G053200 Sobic004G053200 Sobic004G280800--Sobic004G053200 Sobic001G189700 Sobic001G189700 Sobic004G280800--Sobic001G189700 Sobic006G146500 Sobic006G146500 Sobic003G425200--Sobic006G146500 Sobic003G425200--Sobic003G341100 Sobic007G201100 Sobic007G201100 Sobic003G425200--Sobic007G201100 Sobic002G207300 Sobic002G207300 Sobic003G425200--Sobic002G207300 Sobic003G425200--Sobic007G011000 Sobic004G065900 Sobic004G065900 Sobic003G425200--Sobic004G065900 Sobic001G370600 Sobic001G370600 Sobic003G425200--Sobic001G370600 Sobic007G145700 Sobic007G145700 Sobic003G425200--Sobic007G145700 Sobic003G425200--Sobic002G118600 Sobic007G178200 Sobic007G178200 Sobic003G392200--Sobic007G178200 Sobic003G392200--Sobic007G188100 Sobic003G392200--Sobic001G525400 Sobic002G270700 Sobic002G270700 Sobic003G392200--Sobic002G270700 Sobic002G197600 Sobic002G197600 Sobic003G392200--Sobic002G197600 Sobic003G392200--Sobic009G171100 Sobic001G081600 Sobic001G081600 Sobic003G392200--Sobic001G081600 Sobic002G395600 Sobic002G395600 Sobic003G392200--Sobic002G395600 Sobic001G063600 Sobic001G063600 Sobic003G392200--Sobic001G063600
Octagon: transcription factors


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