Gene annotation
| Transcriptome id | Sobic.003G392200.1 |
|---|---|
| Synonym | Sb03g042970 |
| Functional annotation | CXE carboxylesterase, putative, expressed |
| UniProt | A0A1W0W100 |
| Pfam | PF00135 |
| Panther DB | PTHR23024 PTHR23024:SF211 |
| NCBI CDD | KOG1515; Arylacetamide deacetylase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G27320 : alpha/beta-Hydrolases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g67600.1 : CXE carboxylesterase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026391 , Zm00025a039436 |
| Brachypodium | KQK11068 |
| Barley | HORVU3Hr1G088860.5 , HORVU3Hr1G088860.4 , HORVU3Hr1G088860.3 , HORVU3Hr1G088860.2 , HORVU3Hr1G088860.1 |
| Wheat | TraesCS3B02G424900 , TraesCS3A02G393000 , TraesCS3D02G385800 |
| Populus | - |
JBrowse
| Sobic.003G392200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G178200 | ER lumen protein retaining receptor, putative, expressed | - |
| 2 | Sobic.007G188100 | Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed | K13429: chitin elicitor receptor kinase 1 |
| 3 | Sobic.001G525400 | receptor-like protein kinase At3g46290 precursor, putative, expressed | - |
| 4 | Sobic.002G270700 | OsRhmbd16 - Putative Rhomboid homologue, expressed | - |
| 5 | Sobic.002G197600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed | - |
| 6 | Sobic.009G171100 | prenylated rab acceptor, putative, expressed | - |
| 7 | Sobic.001G081600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | - |
| 8 | Sobic.002G395600 | bZIP transcription factor domain containing protein, expressed | - |
| 9 | Sobic.001G063600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 10 | Sobic.003G338900 | expressed protein | - |
| 11 | Sobic.004G025000 | CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 12 | Sobic.008G016900 | glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed | K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing) |
| 13 | Sobic.006G263100 | expressed protein | - |
| 14 | Sobic.002G330300 | chitin-inducible gibberellin-responsive protein, putative, expressed | - |
| 15 | Sobic.002G362900 | IBS1, putative, expressed | - |
| 16 | Sobic.004G278000 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | K19042: E3 ubiquitin-protein ligase BOI and related proteins |
| 17 | Sobic.004G259500 | expressed protein | - |
| 18 | Sobic.004G280800 | Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed | K11805: DCAF7, DDB1- and CUL4-associated factor 7 |
| 19 | Sobic.004G145200 | membrane attack complex component/perforin/complement C9, putative, expressed | - |
| 20 | Sobic.001G476400 | - | - |
Gene co-expression network
Octagon: transcription factors
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