Gene annotation
Transcriptome id Sobic.007G178200.1
Synonym Sb07g024960
Functional annotation ER lumen protein retaining receptor, putative, expressed
UniProt C5YH42
Pfam PF00810
Panther DB PTHR10585 PTHR10585:SF35
NCBI CDD KOG3106; ER lumen protein retaining receptor
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006621protein retention in ER lumen


Orthologs (automatic annotation)
TAIR AT4G38790 : ER lumen protein retaining receptor family protein
RAP-DB (Rice) LOC_Os08g43470.1 : ER lumen protein retaining receptor, putative, expressed
MaizeGDB (Corn) Zm00025a047809 , Zm00025a014448 , Zm00025a005700 , Zm00025a034207
Brachypodium KQJ91211 , KQJ99297
Barley HORVU5Hr1G082570.2 , HORVU5Hr1G082570.1 , HORVU5Hr1G082570.3 , HORVU5Hr1G082570.4 , HORVU7Hr1G057300.2 , HORVU7Hr1G057300.1
Wheat TraesCS5A02G323400 , TraesCS7D02G271700 , TraesCS7B02G170600 , TraesCS7B02G170600 , TraesCS7B02G170600 , TraesCS7A02G271400 , TraesCS7A02G271400 , TraesCS7A02G271400 , TraesCS5B02G323900 , TraesCS5D02G330400
Populus -


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cDNA sequences
Sobic.007G178200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G392200 CXE carboxylesterase, putative, expressed -
2 Sobic.001G416600 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
3 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
5 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
6 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
7 Sobic.004G245900 - -
8 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
9 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
10 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
11 Sobic.003G032900 expressed protein -
12 Sobic.002G362900 IBS1, putative, expressed -
13 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
14 Sobic.002G270700 OsRhmbd16 - Putative Rhomboid homologue, expressed -
15 Sobic.003G225900 expressed protein -
16 Sobic.003G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
17 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
18 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
19 Sobic.003G052400 proline-rich family protein, putative, expressed -
20 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -


Gene co-expression network
sample Sobic007G178200 Sobic007G178200 Sobic003G392200 Sobic003G392200 Sobic007G178200--Sobic003G392200 Sobic001G416600 Sobic001G416600 Sobic007G178200--Sobic001G416600 Sobic004G025000 Sobic004G025000 Sobic007G178200--Sobic004G025000 Sobic008G016900 Sobic008G016900 Sobic007G178200--Sobic008G016900 Sobic003G361300 Sobic003G361300 Sobic007G178200--Sobic003G361300 Sobic009G134600 Sobic009G134600 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic002G330300 Sobic002G330300 Sobic007G178200--Sobic002G330300 Sobic010G071700 Sobic010G071700 Sobic007G178200--Sobic010G071700 Sobic003G392200--Sobic007G178200 Sobic007G188100 Sobic007G188100 Sobic003G392200--Sobic007G188100 Sobic001G525400 Sobic001G525400 Sobic003G392200--Sobic001G525400 Sobic002G270700 Sobic002G270700 Sobic003G392200--Sobic002G270700 Sobic002G197600 Sobic002G197600 Sobic003G392200--Sobic002G197600 Sobic009G171100 Sobic009G171100 Sobic003G392200--Sobic009G171100 Sobic001G081600 Sobic001G081600 Sobic003G392200--Sobic001G081600 Sobic002G395600 Sobic002G395600 Sobic003G392200--Sobic002G395600 Sobic001G063600 Sobic001G063600 Sobic003G392200--Sobic001G063600 Sobic001G416600--Sobic007G178200 Sobic001G416600--Sobic008G016900 Sobic001G409900 Sobic001G409900 Sobic001G416600--Sobic001G409900 Sobic002G362900 Sobic002G362900 Sobic001G416600--Sobic002G362900 Sobic001G416600--Sobic003G392200 Sobic002G243200 Sobic002G243200 Sobic001G416600--Sobic002G243200 Sobic001G416600--Sobic007G188100 Sobic001G442900 Sobic001G442900 Sobic001G416600--Sobic001G442900 Sobic009G104000 Sobic009G104000 Sobic001G416600--Sobic009G104000 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic006G095600 Sobic006G095600 Sobic004G025000--Sobic006G095600 Sobic002G344700 Sobic002G344700 Sobic004G025000--Sobic002G344700 Sobic004G025000--Sobic002G330300 Sobic001G476400 Sobic001G476400 Sobic004G025000--Sobic001G476400 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic008G016900--Sobic002G330300 Sobic008G016900--Sobic002G379400 Sobic010G062800 Sobic010G062800 Sobic008G016900--Sobic010G062800 Sobic001G283500 Sobic001G283500 Sobic008G016900--Sobic001G283500 Sobic008G016900--Sobic007G188100 Sobic004G145200 Sobic004G145200 Sobic008G016900--Sobic004G145200 Sobic001G162100 Sobic001G162100 Sobic008G016900--Sobic001G162100 Sobic009G059700 Sobic009G059700 Sobic008G016900--Sobic009G059700 Sobic002G343500 Sobic002G343500 Sobic008G016900--Sobic002G343500 Sobic001G450800 Sobic001G450800 Sobic003G361300--Sobic001G450800 Sobic001G430700 Sobic001G430700 Sobic003G361300--Sobic001G430700 Sobic003G198150 Sobic003G198150 Sobic003G361300--Sobic003G198150 Sobic008G044750 Sobic008G044750 Sobic003G361300--Sobic008G044750 Sobic003G227600 Sobic003G227600 Sobic003G361300--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic003G361300--Sobic003G040800 Sobic009G216900 Sobic009G216900 Sobic003G361300--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic003G361300--Sobic003G233900 Sobic009G128300 Sobic009G128300 Sobic003G361300--Sobic009G128300 Sobic003G119800 Sobic003G119800 Sobic009G134600--Sobic003G119800 Sobic006G218700 Sobic006G218700 Sobic009G134600--Sobic006G218700 Sobic009G230700 Sobic009G230700 Sobic009G134600--Sobic009G230700 Sobic009G134600--Sobic007G178200 Sobic009G134600--Sobic009G059700 Sobic003G056500 Sobic003G056500 Sobic009G134600--Sobic003G056500 Sobic009G134600--Sobic002G330300 Sobic001G290200 Sobic001G290200 Sobic009G134600--Sobic001G290200 Sobic004G031600 Sobic004G031600 Sobic009G134600--Sobic004G031600 Sobic004G310600 Sobic004G310600 Sobic004G245900--Sobic004G310600 Sobic003G373150 Sobic003G373150 Sobic004G245900--Sobic003G373150 Sobic009G000700 Sobic009G000700 Sobic004G245900--Sobic009G000700 Sobic004G245900--Sobic003G198150 Sobic004G283201 Sobic004G283201 Sobic004G245900--Sobic004G283201 Sobic004G245900--Sobic003G233900 Sobic006G055600 Sobic006G055600 Sobic004G245900--Sobic006G055600 Sobic004G245900--Sobic003G361300 Sobic004G321000 Sobic004G321000 Sobic004G245900--Sobic004G321000 Sobic002G330300--Sobic008G016900 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic010G228000 Sobic010G228000 Sobic002G330300--Sobic010G228000 Sobic007G011000 Sobic007G011000 Sobic002G330300--Sobic007G011000 Sobic002G330300--Sobic004G025000 Sobic002G118600 Sobic002G118600 Sobic002G330300--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G330300--Sobic006G263100 Sobic002G330300--Sobic007G188100 Sobic003G342600 Sobic003G342600 Sobic010G071700--Sobic003G342600 Sobic003G141800 Sobic003G141800 Sobic010G071700--Sobic003G141800 Sobic010G071700--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic010G071700--Sobic009G170100 Sobic003G129400 Sobic003G129400 Sobic010G071700--Sobic003G129400 Sobic009G030200 Sobic009G030200 Sobic010G071700--Sobic009G030200 Sobic005G231700 Sobic005G231700 Sobic010G071700--Sobic005G231700 Sobic010G265600 Sobic010G265600 Sobic010G071700--Sobic010G265600 Sobic006G032200 Sobic006G032200 Sobic010G071700--Sobic006G032200
Octagon: transcription factors


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