Gene annotation
Transcriptome id Sobic.009G134600.1,Sobic.009G134600.2
Synonym GID1C, ATGID1C, Sb09g020080
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
gibberellin receptor GID1L2, putative, expressed
UniProt A0A1B6P8J8 , B0S4S8
Pfam PF07859
Panther DB PTHR23024 PTHR23024:SF98
NCBI CDD KOG1515; Arylacetamide deacetylase
KEGG Orthology K14493; gibberellin receptor GID1
Gene Ontology GO:0016787; hydrolase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G27320 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os05g33730.1 : gibberellin receptor GID1L2, putative, expressed
MaizeGDB (Corn) Zm00025a037470 , Zm00025a043663
Brachypodium KQK06302
Barley HORVU1Hr1G060810.2 , HORVU1Hr1G060810.1
Wheat TraesCS1A02G255100 , TraesCS1B02G265900 , TraesCS1D02G254500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
2 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.009G230700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
4 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
5 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
6 Sobic.003G056500 staphylococcal nuclease homologue, putative, expressed -
7 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
8 Sobic.001G290200 leucine rich repeat containing protein, expressed -
9 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
10 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
11 Sobic.003G376700 glycosyl transferase, putative, expressed -
12 Sobic.003G424400 Spotted leaf protein(PubMedID : 24906815)@armadillo repeat-containing protein, putative, expressed K08332: vacuolar protein 8
13 Sobic.003G407200 calmodulin-binding transcription activator, putative, expressed -
14 Sobic.009G167600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.009G183000 - -
16 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
17 Sobic.002G119800 arginyl-tRNA synthetase, putative, expressed -
18 Sobic.010G052800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
19 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
20 Sobic.001G065700 glycine-rich protein, putative, expressed K13344: peroxin-13


Gene co-expression network
sample Sobic009G134600 Sobic009G134600 Sobic003G119800 Sobic003G119800 Sobic009G134600--Sobic003G119800 Sobic006G218700 Sobic006G218700 Sobic009G134600--Sobic006G218700 Sobic009G230700 Sobic009G230700 Sobic009G134600--Sobic009G230700 Sobic007G178200 Sobic007G178200 Sobic009G134600--Sobic007G178200 Sobic009G059700 Sobic009G059700 Sobic009G134600--Sobic009G059700 Sobic003G056500 Sobic003G056500 Sobic009G134600--Sobic003G056500 Sobic002G330300 Sobic002G330300 Sobic009G134600--Sobic002G330300 Sobic001G290200 Sobic001G290200 Sobic009G134600--Sobic001G290200 Sobic004G031600 Sobic004G031600 Sobic009G134600--Sobic004G031600 Sobic003G119800--Sobic009G134600 Sobic008G189400 Sobic008G189400 Sobic003G119800--Sobic008G189400 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic003G119800--Sobic004G031600 Sobic001G463000 Sobic001G463000 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic003G119800--Sobic009G230700 Sobic009G167600 Sobic009G167600 Sobic003G119800--Sobic009G167600 Sobic006G218700--Sobic009G134600 Sobic003G396000 Sobic003G396000 Sobic006G218700--Sobic003G396000 Sobic003G044200 Sobic003G044200 Sobic006G218700--Sobic003G044200 Sobic006G218700--Sobic003G119800 Sobic003G379700 Sobic003G379700 Sobic006G218700--Sobic003G379700 Sobic001G076000 Sobic001G076000 Sobic006G218700--Sobic001G076000 Sobic006G218700--Sobic009G167600 Sobic006G218700--Sobic003G056500 Sobic003G376700 Sobic003G376700 Sobic006G218700--Sobic003G376700 Sobic009G230700--Sobic009G134600 Sobic009G230700--Sobic003G119800 Sobic003G424400 Sobic003G424400 Sobic009G230700--Sobic003G424400 Sobic003G317200 Sobic003G317200 Sobic009G230700--Sobic003G317200 Sobic009G230700--Sobic002G330300 Sobic004G347900 Sobic004G347900 Sobic009G230700--Sobic004G347900 Sobic009G230700--Sobic003G056500 Sobic005G046100 Sobic005G046100 Sobic009G230700--Sobic005G046100 Sobic002G119800 Sobic002G119800 Sobic009G230700--Sobic002G119800 Sobic003G392200 Sobic003G392200 Sobic007G178200--Sobic003G392200 Sobic001G416600 Sobic001G416600 Sobic007G178200--Sobic001G416600 Sobic004G025000 Sobic004G025000 Sobic007G178200--Sobic004G025000 Sobic008G016900 Sobic008G016900 Sobic007G178200--Sobic008G016900 Sobic003G361300 Sobic003G361300 Sobic007G178200--Sobic003G361300 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic007G178200--Sobic002G330300 Sobic010G071700 Sobic010G071700 Sobic007G178200--Sobic010G071700 Sobic001G162100 Sobic001G162100 Sobic009G059700--Sobic001G162100 Sobic009G059700--Sobic008G016900 Sobic001G283500 Sobic001G283500 Sobic009G059700--Sobic001G283500 Sobic006G225600 Sobic006G225600 Sobic009G059700--Sobic006G225600 Sobic009G059700--Sobic002G330300 Sobic002G368400 Sobic002G368400 Sobic009G059700--Sobic002G368400 Sobic009G059700--Sobic002G119800 Sobic009G059700--Sobic009G134600 Sobic010G062800 Sobic010G062800 Sobic009G059700--Sobic010G062800 Sobic009G159900 Sobic009G159900 Sobic003G056500--Sobic009G159900 Sobic003G056500--Sobic009G134600 Sobic004G273200 Sobic004G273200 Sobic003G056500--Sobic004G273200 Sobic003G056500--Sobic006G218700 Sobic002G141000 Sobic002G141000 Sobic003G056500--Sobic002G141000 Sobic003G036000 Sobic003G036000 Sobic003G056500--Sobic003G036000 Sobic003G056500--Sobic009G230700 Sobic001G342600 Sobic001G342600 Sobic003G056500--Sobic001G342600 Sobic003G424500 Sobic003G424500 Sobic003G056500--Sobic003G424500 Sobic002G330300--Sobic008G016900 Sobic002G379400 Sobic002G379400 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic010G228000 Sobic010G228000 Sobic002G330300--Sobic010G228000 Sobic007G011000 Sobic007G011000 Sobic002G330300--Sobic007G011000 Sobic002G330300--Sobic004G025000 Sobic002G118600 Sobic002G118600 Sobic002G330300--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G330300--Sobic006G263100 Sobic007G188100 Sobic007G188100 Sobic002G330300--Sobic007G188100 Sobic009G137800 Sobic009G137800 Sobic001G290200--Sobic009G137800 Sobic001G290200--Sobic003G119800 Sobic001G290200--Sobic005G046100 Sobic001G351700 Sobic001G351700 Sobic001G290200--Sobic001G351700 Sobic008G025900 Sobic008G025900 Sobic001G290200--Sobic008G025900 Sobic010G260500 Sobic010G260500 Sobic001G290200--Sobic010G260500 Sobic002G324200 Sobic002G324200 Sobic001G290200--Sobic002G324200 Sobic003G081100 Sobic003G081100 Sobic001G290200--Sobic003G081100 Sobic005G167300 Sobic005G167300 Sobic001G290200--Sobic005G167300 Sobic001G516100 Sobic001G516100 Sobic004G031600--Sobic001G516100 Sobic004G031600--Sobic010G052800 Sobic004G031600--Sobic002G330300 Sobic009G231200 Sobic009G231200 Sobic004G031600--Sobic009G231200 Sobic003G407200 Sobic003G407200 Sobic004G031600--Sobic003G407200 Sobic001G031600 Sobic001G031600 Sobic004G031600--Sobic001G031600 Sobic004G031600--Sobic003G119800 Sobic007G169200 Sobic007G169200 Sobic004G031600--Sobic007G169200 Sobic004G031600--Sobic001G463000
Octagon: transcription factors


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