Gene annotation
Transcriptome id Sobic.004G031600.1,Sobic.004G031600.2,Sobic.004G031600.3,Sobic.004G031600.4
Synonym Sb04g002730
Functional annotation cyclin-T1-1, putative, expressed
UniProt A0A1Z5RKP9 , A0A194YMJ3 , C5XTW3 , A0A1Z5RLI4
Pfam PF00134
Panther DB PTHR10026 PTHR10026:SF76
NCBI CDD KOG0834; CDK9 kinase-activating protein cyclin T
KEGG Orthology K15188; cyclin T
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT5G45190 : Cyclin family protein
RAP-DB (Rice) LOC_Os02g04010.2 : cyclin-T1-1, putative, expressed
MaizeGDB (Corn) Zm00025a018879
Brachypodium KQJ93163 , KQJ93162 , KQJ93164 , KQJ93161 , KQJ93160
Barley HORVU6Hr1G017740.2 , HORVU6Hr1G017740.1
Wheat TraesCS6B02G125000 , TraesCS6A02G096600 , TraesCS6D02G087700
Populus -


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cDNA sequences
Sobic.004G031600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
2 Sobic.010G052800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
3 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
4 Sobic.009G231200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein of unknown function DUF1421 domain containing protein, expressed -
5 Sobic.003G407200 calmodulin-binding transcription activator, putative, expressed -
6 Sobic.001G031600 calmodulin binding protein, putative, expressed -
7 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
8 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
9 Sobic.001G463000 syntaxin 6, N-terminal domain containing protein, expressed -
10 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
11 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
12 Sobic.003G272400 DUF292 domain containing protein, expressed -
13 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
14 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.002G276400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
16 Sobic.006G263100 expressed protein -
17 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
18 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
19 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote
20 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44


Gene co-expression network
sample Sobic004G031600 Sobic004G031600 Sobic001G516100 Sobic001G516100 Sobic004G031600--Sobic001G516100 Sobic010G052800 Sobic010G052800 Sobic004G031600--Sobic010G052800 Sobic002G330300 Sobic002G330300 Sobic004G031600--Sobic002G330300 Sobic009G231200 Sobic009G231200 Sobic004G031600--Sobic009G231200 Sobic003G407200 Sobic003G407200 Sobic004G031600--Sobic003G407200 Sobic001G031600 Sobic001G031600 Sobic004G031600--Sobic001G031600 Sobic003G119800 Sobic003G119800 Sobic004G031600--Sobic003G119800 Sobic007G169200 Sobic007G169200 Sobic004G031600--Sobic007G169200 Sobic001G463000 Sobic001G463000 Sobic004G031600--Sobic001G463000 Sobic001G516100--Sobic004G031600 Sobic001G103200 Sobic001G103200 Sobic001G516100--Sobic001G103200 Sobic003G367300 Sobic003G367300 Sobic001G516100--Sobic003G367300 Sobic004G271700 Sobic004G271700 Sobic001G516100--Sobic004G271700 Sobic001G516100--Sobic002G330300 Sobic002G293300 Sobic002G293300 Sobic001G516100--Sobic002G293300 Sobic001G541100 Sobic001G541100 Sobic001G516100--Sobic001G541100 Sobic003G002400 Sobic003G002400 Sobic001G516100--Sobic003G002400 Sobic004G274400 Sobic004G274400 Sobic001G516100--Sobic004G274400 Sobic010G052800--Sobic002G330300 Sobic002G413000 Sobic002G413000 Sobic010G052800--Sobic002G413000 Sobic010G052800--Sobic002G293300 Sobic001G482100 Sobic001G482100 Sobic010G052800--Sobic001G482100 Sobic010G052800--Sobic004G031600 Sobic006G263100 Sobic006G263100 Sobic010G052800--Sobic006G263100 Sobic002G379400 Sobic002G379400 Sobic010G052800--Sobic002G379400 Sobic004G280800 Sobic004G280800 Sobic010G052800--Sobic004G280800 Sobic007G059900 Sobic007G059900 Sobic010G052800--Sobic007G059900 Sobic008G016900 Sobic008G016900 Sobic002G330300--Sobic008G016900 Sobic002G330300--Sobic002G379400 Sobic002G330300--Sobic010G052800 Sobic010G228000 Sobic010G228000 Sobic002G330300--Sobic010G228000 Sobic007G011000 Sobic007G011000 Sobic002G330300--Sobic007G011000 Sobic004G025000 Sobic004G025000 Sobic002G330300--Sobic004G025000 Sobic002G118600 Sobic002G118600 Sobic002G330300--Sobic002G118600 Sobic002G330300--Sobic006G263100 Sobic007G188100 Sobic007G188100 Sobic002G330300--Sobic007G188100 Sobic009G231200--Sobic004G031600 Sobic009G231200--Sobic002G293300 Sobic009G231200--Sobic010G052800 Sobic009G180500 Sobic009G180500 Sobic009G231200--Sobic009G180500 Sobic001G082900 Sobic001G082900 Sobic009G231200--Sobic001G082900 Sobic009G200800 Sobic009G200800 Sobic009G231200--Sobic009G200800 Sobic001G333600 Sobic001G333600 Sobic009G231200--Sobic001G333600 Sobic005G026100 Sobic005G026100 Sobic009G231200--Sobic005G026100 Sobic009G231200--Sobic001G031600 Sobic003G407200--Sobic004G031600 Sobic001G162100 Sobic001G162100 Sobic003G407200--Sobic001G162100 Sobic002G306000 Sobic002G306000 Sobic003G407200--Sobic002G306000 Sobic003G407200--Sobic008G016900 Sobic003G407200--Sobic001G516100 Sobic003G272400 Sobic003G272400 Sobic003G407200--Sobic003G272400 Sobic010G068500 Sobic010G068500 Sobic003G407200--Sobic010G068500 Sobic007G178200 Sobic007G178200 Sobic003G407200--Sobic007G178200 Sobic009G134600 Sobic009G134600 Sobic003G407200--Sobic009G134600 Sobic001G105500 Sobic001G105500 Sobic001G031600--Sobic001G105500 Sobic001G031600--Sobic002G413000 Sobic006G209400 Sobic006G209400 Sobic001G031600--Sobic006G209400 Sobic009G193400 Sobic009G193400 Sobic001G031600--Sobic009G193400 Sobic001G031600--Sobic003G002400 Sobic003G309200 Sobic003G309200 Sobic001G031600--Sobic003G309200 Sobic007G019800 Sobic007G019800 Sobic001G031600--Sobic007G019800 Sobic001G031600--Sobic004G031600 Sobic001G031600--Sobic001G541100 Sobic003G119800--Sobic009G134600 Sobic008G189400 Sobic008G189400 Sobic003G119800--Sobic008G189400 Sobic001G290200 Sobic001G290200 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic003G119800--Sobic004G031600 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic009G230700 Sobic009G230700 Sobic003G119800--Sobic009G230700 Sobic009G167600 Sobic009G167600 Sobic003G119800--Sobic009G167600 Sobic002G197600 Sobic002G197600 Sobic007G169200--Sobic002G197600 Sobic002G207300 Sobic002G207300 Sobic007G169200--Sobic002G207300 Sobic007G169200--Sobic002G330300 Sobic007G169200--Sobic002G118600 Sobic007G169200--Sobic007G011000 Sobic001G403600 Sobic001G403600 Sobic007G169200--Sobic001G403600 Sobic003G141000 Sobic003G141000 Sobic007G169200--Sobic003G141000 Sobic001G386000 Sobic001G386000 Sobic007G169200--Sobic001G386000 Sobic001G450700 Sobic001G450700 Sobic007G169200--Sobic001G450700 Sobic001G463000--Sobic003G119800 Sobic001G463000--Sobic004G031600 Sobic001G463000--Sobic001G541100 Sobic009G219000 Sobic009G219000 Sobic001G463000--Sobic009G219000 Sobic009G138100 Sobic009G138100 Sobic001G463000--Sobic009G138100 Sobic001G463000--Sobic004G274400 Sobic003G361500 Sobic003G361500 Sobic001G463000--Sobic003G361500 Sobic001G463000--Sobic001G516100 Sobic002G394400 Sobic002G394400 Sobic001G463000--Sobic002G394400
Octagon: transcription factors


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