Gene annotation
| Transcriptome id | Sobic.003G272400.1 |
|---|---|
| Synonym | Sb03g032440 |
| Functional annotation | DUF292 domain containing protein, expressed |
| UniProt | C5XHN0 |
| Pfam | PF03398 |
| Panther DB | PTHR12161 PTHR12161:SF13 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G19710 : Regulator of Vps4 activity in the MVB pathway protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g51010.1 : DUF292 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a038927 , Zm00025a026633 , Zm00025a031434 , Zm00025a031320 , Zm00025a039839 , Zm00025a058142 |
| Brachypodium | KQK09398 , PNT72678 , PNT72677 |
| Barley | HORVU3Hr1G066420.6 , HORVU3Hr1G066420.5 , HORVU3Hr1G066420.4 , HORVU3Hr1G066420.3 , HORVU3Hr1G066420.2 , HORVU3Hr1G066420.1 |
| Wheat | TraesCS3A02G252800 , TraesCS3B02G288900 , TraesCS3B02G288900 , TraesCS3B02G284600 , TraesCS3D02G253500 , TraesCS3D02G253500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G353600 | sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed | K15378: solute carrier family 45, member 1/2/4 |
| 2 | Sobic.003G281900 | regulator of chromosome condensation, putative, expressed | - |
| 3 | Sobic.003G252400 | drought induced 19 protein, putative, expressed | - |
| 4 | Sobic.002G306000 | calmodulin-binding transcription activator 5, putative, expressed | - |
| 5 | Sobic.010G260300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 6 | Sobic.003G126300 | OsRhmbd2 - Putative Rhomboid homologue, expressed | - |
| 7 | Sobic.006G207900 | DNA binding protein, putative, expressed | - |
| 8 | Sobic.001G110900 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 9 | Sobic.004G309600 | ABA signaling component(PubMedID : 24151305)@"Central regulator in ABA signaling, biosynthesis, and drought resistance in rice"(PubMedID : 30367619)@bZIP transcription factor, putative, expressed | K14432: ABA responsive element binding factor |
| 10 | Sobic.003G087100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.002G110200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 12 | Sobic.009G079300 | receptor protein kinase-like, putative, expressed | - |
| 13 | Sobic.002G331450 | - | - |
| 14 | Sobic.004G211301 | - | - |
| 15 | Sobic.003G229000 | cytochrome P450 72A1, putative, expressed | - |
| 16 | Sobic.003G407200 | calmodulin-binding transcription activator, putative, expressed | - |
| 17 | Sobic.006G203000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed | K17893: AOX1, ubiquinol oxidase |
| 18 | Sobic.002G325600 | ankyrin repeat family protein, putative, expressed | - |
| 19 | Sobic.004G031600 | cyclin-T1-1, putative, expressed | K15188: cyclin T |
| 20 | Sobic.006G078300 | - | - |
Gene co-expression network
Octagon: transcription factors
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