Gene annotation
Transcriptome id Sobic.007G169200.1
Synonym Sb07g024180
Functional annotation EF hand family protein, putative, expressed
UniProt C5YN75
Pfam PF13202 PF13405
Panther DB PTHR10183 PTHR10183:SF299
NCBI CDD KOG0037; Ca2+-binding protein, EF-Hand protein superfamily
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G04170 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os08g44390.2 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a030554
Brachypodium KQJ99360
Barley HORVU7Hr1G027810.18 , HORVU7Hr1G027810.15 , HORVU7Hr1G027810.14 , HORVU7Hr1G027810.17 , HORVU7Hr1G027810.16 , HORVU7Hr1G027810.11 , HORVU7Hr1G027810.10 , HORVU7Hr1G027810.13 , HORVU7Hr1G027810.12 , HORVU7Hr1G027810.9 , HORVU7Hr1G027810.8 , HORVU7Hr1G027810.1 , HORVU7Hr1G027810.3 , HORVU7Hr1G027810.2 , HORVU7Hr1G027810.5 , HORVU7Hr1G027810.4 , HORVU7Hr1G027810.7 , HORVU7Hr1G027810.6
Wheat TraesCS7D02G133400 , TraesCS7B02G035100 , TraesCS7A02G134000
Populus -


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cDNA sequences
Sobic.007G169200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.002G207300 tetraspanin family protein, putative, expressed -
3 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
4 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
5 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
6 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
7 Sobic.003G141000 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
8 Sobic.001G386000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
9 Sobic.001G450700 RHsf 8/ Hsf 3(PubMedID : 27006630)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
10 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
11 Sobic.006G263100 expressed protein -
12 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
13 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
14 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
15 Sobic.004G267500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
16 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
17 Sobic.008G059000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
18 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
19 Sobic.007G006600 expressed protein -
20 Sobic.005G139700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase


Gene co-expression network
sample Sobic007G169200 Sobic007G169200 Sobic002G197600 Sobic002G197600 Sobic007G169200--Sobic002G197600 Sobic002G207300 Sobic002G207300 Sobic007G169200--Sobic002G207300 Sobic002G330300 Sobic002G330300 Sobic007G169200--Sobic002G330300 Sobic002G118600 Sobic002G118600 Sobic007G169200--Sobic002G118600 Sobic007G011000 Sobic007G011000 Sobic007G169200--Sobic007G011000 Sobic001G403600 Sobic001G403600 Sobic007G169200--Sobic001G403600 Sobic003G141000 Sobic003G141000 Sobic007G169200--Sobic003G141000 Sobic001G386000 Sobic001G386000 Sobic007G169200--Sobic001G386000 Sobic001G450700 Sobic001G450700 Sobic007G169200--Sobic001G450700 Sobic001G081600 Sobic001G081600 Sobic002G197600--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic002G197600--Sobic002G217100 Sobic001G462800 Sobic001G462800 Sobic002G197600--Sobic001G462800 Sobic004G281200 Sobic004G281200 Sobic002G197600--Sobic004G281200 Sobic006G210300 Sobic006G210300 Sobic002G197600--Sobic006G210300 Sobic002G367900 Sobic002G367900 Sobic002G197600--Sobic002G367900 Sobic008G036000 Sobic008G036000 Sobic002G197600--Sobic008G036000 Sobic004G244100 Sobic004G244100 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900 Sobic004G065900 Sobic004G065900 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic007G201100 Sobic007G201100 Sobic002G207300--Sobic007G201100 Sobic006G146500 Sobic006G146500 Sobic002G207300--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G294600 Sobic002G294600 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic001G095700 Sobic001G095700 Sobic002G207300--Sobic001G095700 Sobic008G016900 Sobic008G016900 Sobic002G330300--Sobic008G016900 Sobic002G379400 Sobic002G379400 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic010G228000 Sobic010G228000 Sobic002G330300--Sobic010G228000 Sobic002G330300--Sobic007G011000 Sobic004G025000 Sobic004G025000 Sobic002G330300--Sobic004G025000 Sobic002G330300--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G330300--Sobic006G263100 Sobic007G188100 Sobic007G188100 Sobic002G330300--Sobic007G188100 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic001G341600 Sobic001G341600 Sobic002G118600--Sobic001G341600 Sobic003G341100 Sobic003G341100 Sobic002G118600--Sobic003G341100 Sobic002G118600--Sobic010G228000 Sobic002G374100 Sobic002G374100 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic007G011000--Sobic002G118600 Sobic007G011000--Sobic002G330300 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic004G280800 Sobic004G280800 Sobic007G011000--Sobic004G280800 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic007G011000--Sobic004G025000 Sobic001G403600--Sobic002G118600 Sobic001G403600--Sobic001G290400 Sobic001G403600--Sobic001G081600 Sobic001G403600--Sobic010G228000 Sobic001G403600--Sobic004G280800 Sobic001G189700 Sobic001G189700 Sobic001G403600--Sobic001G189700 Sobic001G403600--Sobic007G011000 Sobic005G139700 Sobic005G139700 Sobic001G403600--Sobic005G139700 Sobic001G482700 Sobic001G482700 Sobic001G403600--Sobic001G482700 Sobic003G141000--Sobic001G450700 Sobic003G141000--Sobic007G169200 Sobic003G141000--Sobic001G410100 Sobic003G141000--Sobic002G207300 Sobic003G141000--Sobic001G386000 Sobic001G436000 Sobic001G436000 Sobic003G141000--Sobic001G436000 Sobic007G196600 Sobic007G196600 Sobic003G141000--Sobic007G196600 Sobic003G290100 Sobic003G290100 Sobic003G141000--Sobic003G290100 Sobic007G006600 Sobic007G006600 Sobic003G141000--Sobic007G006600 Sobic001G386000--Sobic007G169200 Sobic001G386000--Sobic001G147200 Sobic001G386000--Sobic002G118600 Sobic001G386000--Sobic007G212200 Sobic001G386000--Sobic001G410100 Sobic001G386000--Sobic007G011000 Sobic001G386000--Sobic002G330300 Sobic002G222800 Sobic002G222800 Sobic001G386000--Sobic002G222800 Sobic010G023200 Sobic010G023200 Sobic001G386000--Sobic010G023200 Sobic001G450700--Sobic003G141000 Sobic001G450700--Sobic007G169200 Sobic001G450700--Sobic007G006600 Sobic001G220400 Sobic001G220400 Sobic001G450700--Sobic001G220400 Sobic003G369500 Sobic003G369500 Sobic001G450700--Sobic003G369500 Sobic001G450700--Sobic001G436000 Sobic010G232100 Sobic010G232100 Sobic001G450700--Sobic010G232100 Sobic001G450700--Sobic007G196600 Sobic002G293300 Sobic002G293300 Sobic001G450700--Sobic002G293300
Octagon: transcription factors


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