Gene annotation
Transcriptome id Sobic.003G141000.1
Synonym Sb03g012020
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5XI27
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF369
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K14803; protein phosphatase PTC2/3
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT3G62260 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os01g19130.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a035125
Brachypodium KQK04043 , KQK04044
Barley HORVU1Hr1G016640.2 , HORVU1Hr1G016640.3 , HORVU1Hr1G016640.1 , HORVU1Hr1G016640.6 , HORVU1Hr1G016640.7 , HORVU1Hr1G016640.4 , HORVU1Hr1G016640.5 , HORVU1Hr1G052160.2 , HORVU1Hr1G052160.1 , HORVU5Hr1G020300.8 , HORVU5Hr1G020300.6 , HORVU5Hr1G020300.7 , HORVU5Hr1G020300.4 , HORVU5Hr1G020300.5 , HORVU5Hr1G020300.2 , HORVU5Hr1G020300.3 , HORVU5Hr1G020300.1
Wheat TraesCS5D02G089900 , TraesCS5B02G082500 , TraesCS5A02G076600
Populus -


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cDNA sequences
Sobic.003G141000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G450700 RHsf 8/ Hsf 3(PubMedID : 27006630)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
2 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
3 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
4 Sobic.002G207300 tetraspanin family protein, putative, expressed -
5 Sobic.001G386000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
6 Sobic.001G436000 expressed protein -
7 Sobic.007G196600 proteophosphoglycan ppg4, putative, expressed K13456: RPM1-interacting protein 4
8 Sobic.003G290100 dual specificity protein phosphatase, putative, expressed -
9 Sobic.007G006600 expressed protein -
10 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
11 Sobic.007G044300 similar to Os08g0155400 protein(PubMedID : 29862293)@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
12 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
13 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
14 Sobic.006G261300 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
15 Sobic.001G161200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
16 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
17 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
18 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
19 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote
20 Sobic.001G118900 DUF292 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G141000 Sobic003G141000 Sobic001G450700 Sobic001G450700 Sobic003G141000--Sobic001G450700 Sobic007G169200 Sobic007G169200 Sobic003G141000--Sobic007G169200 Sobic001G410100 Sobic001G410100 Sobic003G141000--Sobic001G410100 Sobic002G207300 Sobic002G207300 Sobic003G141000--Sobic002G207300 Sobic001G386000 Sobic001G386000 Sobic003G141000--Sobic001G386000 Sobic001G436000 Sobic001G436000 Sobic003G141000--Sobic001G436000 Sobic007G196600 Sobic007G196600 Sobic003G141000--Sobic007G196600 Sobic003G290100 Sobic003G290100 Sobic003G141000--Sobic003G290100 Sobic007G006600 Sobic007G006600 Sobic003G141000--Sobic007G006600 Sobic001G450700--Sobic003G141000 Sobic001G450700--Sobic007G169200 Sobic001G450700--Sobic007G006600 Sobic001G220400 Sobic001G220400 Sobic001G450700--Sobic001G220400 Sobic003G369500 Sobic003G369500 Sobic001G450700--Sobic003G369500 Sobic001G450700--Sobic001G436000 Sobic010G232100 Sobic010G232100 Sobic001G450700--Sobic010G232100 Sobic001G450700--Sobic007G196600 Sobic002G293300 Sobic002G293300 Sobic001G450700--Sobic002G293300 Sobic002G197600 Sobic002G197600 Sobic007G169200--Sobic002G197600 Sobic007G169200--Sobic002G207300 Sobic002G330300 Sobic002G330300 Sobic007G169200--Sobic002G330300 Sobic002G118600 Sobic002G118600 Sobic007G169200--Sobic002G118600 Sobic007G011000 Sobic007G011000 Sobic007G169200--Sobic007G011000 Sobic001G403600 Sobic001G403600 Sobic007G169200--Sobic001G403600 Sobic007G169200--Sobic003G141000 Sobic007G169200--Sobic001G386000 Sobic007G169200--Sobic001G450700 Sobic001G287600 Sobic001G287600 Sobic001G410100--Sobic001G287600 Sobic001G410100--Sobic002G207300 Sobic003G341100 Sobic003G341100 Sobic001G410100--Sobic003G341100 Sobic001G410100--Sobic007G011000 Sobic009G100500 Sobic009G100500 Sobic001G410100--Sobic009G100500 Sobic001G410100--Sobic002G118600 Sobic009G044400 Sobic009G044400 Sobic001G410100--Sobic009G044400 Sobic007G212200 Sobic007G212200 Sobic001G410100--Sobic007G212200 Sobic004G065900 Sobic004G065900 Sobic001G410100--Sobic004G065900 Sobic002G207300--Sobic004G065900 Sobic002G367900 Sobic002G367900 Sobic002G207300--Sobic002G367900 Sobic007G201100 Sobic007G201100 Sobic002G207300--Sobic007G201100 Sobic006G146500 Sobic006G146500 Sobic002G207300--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G294600 Sobic002G294600 Sobic002G207300--Sobic002G294600 Sobic002G207300--Sobic001G410100 Sobic001G095700 Sobic001G095700 Sobic002G207300--Sobic001G095700 Sobic001G386000--Sobic007G169200 Sobic001G147200 Sobic001G147200 Sobic001G386000--Sobic001G147200 Sobic001G386000--Sobic002G118600 Sobic001G386000--Sobic007G212200 Sobic001G386000--Sobic001G410100 Sobic001G386000--Sobic007G011000 Sobic001G386000--Sobic002G330300 Sobic002G222800 Sobic002G222800 Sobic001G386000--Sobic002G222800 Sobic010G023200 Sobic010G023200 Sobic001G386000--Sobic010G023200 Sobic002G379400 Sobic002G379400 Sobic001G436000--Sobic002G379400 Sobic001G436000--Sobic002G293300 Sobic004G025000 Sobic004G025000 Sobic001G436000--Sobic004G025000 Sobic008G059000 Sobic008G059000 Sobic001G436000--Sobic008G059000 Sobic001G081600 Sobic001G081600 Sobic001G436000--Sobic001G081600 Sobic001G436000--Sobic002G330300 Sobic003G367300 Sobic003G367300 Sobic001G436000--Sobic003G367300 Sobic006G205200 Sobic006G205200 Sobic001G436000--Sobic006G205200 Sobic002G344700 Sobic002G344700 Sobic001G436000--Sobic002G344700 Sobic007G196600--Sobic002G118600 Sobic001G343900 Sobic001G343900 Sobic007G196600--Sobic001G343900 Sobic003G352400 Sobic003G352400 Sobic007G196600--Sobic003G352400 Sobic007G044300 Sobic007G044300 Sobic007G196600--Sobic007G044300 Sobic006G044932 Sobic006G044932 Sobic007G196600--Sobic006G044932 Sobic001G314700 Sobic001G314700 Sobic007G196600--Sobic001G314700 Sobic007G196600--Sobic001G410100 Sobic009G046600 Sobic009G046600 Sobic007G196600--Sobic009G046600 Sobic007G196600--Sobic002G222800 Sobic006G130800 Sobic006G130800 Sobic003G290100--Sobic006G130800 Sobic010G156000 Sobic010G156000 Sobic003G290100--Sobic010G156000 Sobic003G162000 Sobic003G162000 Sobic003G290100--Sobic003G162000 Sobic003G290100--Sobic003G141000 Sobic001G541100 Sobic001G541100 Sobic003G290100--Sobic001G541100 Sobic005G026100 Sobic005G026100 Sobic003G290100--Sobic005G026100 Sobic006G027000 Sobic006G027000 Sobic003G290100--Sobic006G027000 Sobic003G403500 Sobic003G403500 Sobic003G290100--Sobic003G403500 Sobic001G339500 Sobic001G339500 Sobic003G290100--Sobic001G339500 Sobic007G006600--Sobic003G367300 Sobic007G006600--Sobic002G118600 Sobic007G006600--Sobic001G450700 Sobic007G006600--Sobic007G169200 Sobic007G006600--Sobic002G293300 Sobic007G006600--Sobic002G330300 Sobic010G094600 Sobic010G094600 Sobic007G006600--Sobic010G094600 Sobic007G188100 Sobic007G188100 Sobic007G006600--Sobic007G188100 Sobic007G006600--Sobic001G147200
Octagon: transcription factors


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