Gene annotation
Transcriptome id Sobic.009G219900.1
Synonym Sb09g027420
Functional annotation peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
UniProt C5YUZ4
Pfam PF01195
Panther DB PTHR17224 PTHR17224:SF5
NCBI CDD KOG2255; Peptidyl-tRNA hydrolase
KEGG Orthology K01056; PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
Gene Ontology GO:0004045; aminoacyl-tRNA hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G18440 : Peptidyl-tRNA hydrolase family protein
RAP-DB (Rice) LOC_Os05g47630.1 : peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a044446
Brachypodium KQK05048
Barley HORVU1Hr1G082650.1 , HORVU1Hr1G082650.2 , HORVU1Hr1G082650.3 , HORVU1Hr1G082650.6 , HORVU1Hr1G082650.7 , HORVU1Hr1G082650.8 , HORVU1Hr1G082650.9
Wheat TraesCS1A02G371800 , TraesCS1B02G391800 , TraesCS1D02G378700 , TraesCS1D02G378700
Populus PNT09746


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
2 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
3 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
4 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
5 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
6 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
7 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
8 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
9 Sobic.002G431600 protein kinase APK1B, chloroplast precursor, putative, expressed -
10 Sobic.001G162100 WRKY94, expressed -
11 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
12 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
13 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
14 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
15 Sobic.003G076500 MYB family transcription factor, putative, expressed -
16 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
17 Sobic.002G122700 expressed protein -
18 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
19 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
20 Sobic.001G031600 calmodulin binding protein, putative, expressed -


Gene co-expression network
sample Sobic009G219900 Sobic009G219900 Sobic010G188100 Sobic010G188100 Sobic009G219900--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic009G219900--Sobic001G220400 Sobic003G077900 Sobic003G077900 Sobic009G219900--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic010G101500 Sobic010G101500 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic002G431600 Sobic002G431600 Sobic009G219900--Sobic002G431600 Sobic010G188100--Sobic001G220400 Sobic010G188100--Sobic009G219900 Sobic010G188100--Sobic010G101500 Sobic003G367451 Sobic003G367451 Sobic010G188100--Sobic003G367451 Sobic010G188100--Sobic003G077900 Sobic009G001400 Sobic009G001400 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic002G166900 Sobic002G166900 Sobic010G188100--Sobic002G166900 Sobic001G283500 Sobic001G283500 Sobic010G188100--Sobic001G283500 Sobic001G220400--Sobic010G188100 Sobic001G220400--Sobic009G219900 Sobic001G220400--Sobic010G101500 Sobic001G220400--Sobic003G077900 Sobic001G220400--Sobic003G367451 Sobic003G220600 Sobic003G220600 Sobic001G220400--Sobic003G220600 Sobic001G220400--Sobic009G001400 Sobic006G163000 Sobic006G163000 Sobic001G220400--Sobic006G163000 Sobic002G122700 Sobic002G122700 Sobic001G220400--Sobic002G122700 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic009G219000 Sobic009G219000 Sobic001G541100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic001G541100--Sobic001G323000 Sobic001G541100--Sobic009G219900 Sobic009G138100 Sobic009G138100 Sobic001G541100--Sobic009G138100 Sobic006G209400 Sobic006G209400 Sobic001G541100--Sobic006G209400 Sobic001G395400 Sobic001G395400 Sobic001G541100--Sobic001G395400 Sobic010G130000 Sobic010G130000 Sobic001G541100--Sobic010G130000 Sobic001G105500 Sobic001G105500 Sobic001G541100--Sobic001G105500 Sobic002G134600 Sobic002G134600 Sobic001G541100--Sobic002G134600 Sobic001G328200--Sobic010G188100 Sobic001G328200--Sobic009G219900 Sobic006G092400 Sobic006G092400 Sobic001G328200--Sobic006G092400 Sobic001G328200--Sobic010G101500 Sobic003G002400 Sobic003G002400 Sobic001G328200--Sobic003G002400 Sobic003G312200 Sobic003G312200 Sobic001G328200--Sobic003G312200 Sobic002G358800 Sobic002G358800 Sobic001G328200--Sobic002G358800 Sobic007G139700 Sobic007G139700 Sobic001G328200--Sobic007G139700 Sobic001G328200--Sobic002G166900 Sobic004G234900 Sobic004G234900 Sobic006G225600--Sobic004G234900 Sobic002G251700 Sobic002G251700 Sobic006G225600--Sobic002G251700 Sobic001G162100 Sobic001G162100 Sobic006G225600--Sobic001G162100 Sobic001G098200 Sobic001G098200 Sobic006G225600--Sobic001G098200 Sobic003G295400 Sobic003G295400 Sobic006G225600--Sobic003G295400 Sobic006G225600--Sobic002G122700 Sobic004G274400 Sobic004G274400 Sobic006G225600--Sobic004G274400 Sobic001G051200 Sobic001G051200 Sobic006G225600--Sobic001G051200 Sobic001G434900 Sobic001G434900 Sobic006G225600--Sobic001G434900 Sobic010G101500--Sobic010G188100 Sobic010G101500--Sobic003G220600 Sobic010G101500--Sobic001G220400 Sobic002G045300 Sobic002G045300 Sobic010G101500--Sobic002G045300 Sobic010G101500--Sobic003G077900 Sobic001G440700 Sobic001G440700 Sobic010G101500--Sobic001G440700 Sobic010G101500--Sobic002G122700 Sobic010G101500--Sobic002G400000 Sobic010G101500--Sobic009G219900 Sobic008G089900 Sobic008G089900 Sobic001G414500--Sobic008G089900 Sobic001G414500--Sobic009G219900 Sobic006G261300 Sobic006G261300 Sobic001G414500--Sobic006G261300 Sobic001G414500--Sobic006G092400 Sobic002G217400 Sobic002G217400 Sobic001G414500--Sobic002G217400 Sobic001G414500--Sobic003G077900 Sobic002G290400 Sobic002G290400 Sobic001G414500--Sobic002G290400 Sobic006G090000 Sobic006G090000 Sobic001G414500--Sobic006G090000 Sobic001G503300 Sobic001G503300 Sobic001G414500--Sobic001G503300 Sobic001G417900 Sobic001G417900 Sobic002G431600--Sobic001G417900 Sobic002G431600--Sobic009G219900 Sobic004G301900 Sobic004G301900 Sobic002G431600--Sobic004G301900 Sobic002G431600--Sobic010G130000 Sobic006G033200 Sobic006G033200 Sobic002G431600--Sobic006G033200 Sobic002G431600--Sobic003G077900 Sobic006G119800 Sobic006G119800 Sobic002G431600--Sobic006G119800 Sobic002G431600--Sobic004G060600 Sobic006G054500 Sobic006G054500 Sobic002G431600--Sobic006G054500
Octagon: transcription factors


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