Gene annotation
Transcriptome id Sobic.006G033200.1,Sobic.006G033200.2
Synonym KEU, Sb06g003780
Functional annotation Sec1 family transport protein, putative, expressed
UniProt A0A1Z5RBY1 , A0A1B6PJT7
Pfam PF00995
Panther DB PTHR11679 PTHR11679:SF38
NCBI CDD -
KEGG Orthology K15292; STXBP1, syntaxin-binding protein 1
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006904vesicle docking involved in exocytosis


Orthologs (automatic annotation)
TAIR AT1G12360 : Sec1/munc18-like (SM) proteins superfamily
RAP-DB (Rice) LOC_Os02g25580.1 : Sec1 family transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a019682 , Zm00025a012007
Brachypodium KQK14248 , KQJ81993
Barley HORVU6Hr1G043390.5 , HORVU6Hr1G043390.18 , HORVU6Hr1G043390.15 , HORVU6Hr1G043390.14 , HORVU6Hr1G043390.17 , HORVU6Hr1G043390.16 , HORVU6Hr1G043390.11 , HORVU6Hr1G043390.10 , HORVU6Hr1G043390.13 , HORVU6Hr1G043390.12 , HORVU6Hr1G043390.8 , HORVU2Hr1G011610.20 , HORVU6Hr1G043520.1 , HORVU6Hr1G043390.7 , HORVU2Hr1G011610.9 , HORVU2Hr1G011610.8 , HORVU2Hr1G011610.7 , HORVU2Hr1G011610.6 , HORVU2Hr1G011610.5 , HORVU2Hr1G011610.4 , HORVU2Hr1G011610.3 , HORVU2Hr1G011610.2 , HORVU2Hr1G011610.1 , HORVU6Hr1G043490.2 , HORVU6Hr1G043490.3 , HORVU6Hr1G043490.1 , HORVU6Hr1G043490.4 , HORVU6Hr1G043490.5 , HORVU6Hr1G043390.9 , HORVU6Hr1G043390.3 , HORVU6Hr1G043390.2 , HORVU6Hr1G043390.4 , HORVU6Hr1G043390.6 , HORVU6Hr1G043390.1 , HORVU2Hr1G011610.17 , HORVU2Hr1G011610.16 , HORVU2Hr1G011610.15 , HORVU2Hr1G011610.14 , HORVU2Hr1G011610.13 , HORVU2Hr1G011610.12 , HORVU2Hr1G011610.11 , HORVU2Hr1G011610.10 , HORVU2Hr1G011610.19 , HORVU2Hr1G011610.18
Wheat TraesCS2D02G060000 , TraesCS2D02G060000 , TraesCS2D02G060000 , TraesCS6B02G231900 , TraesCS6A02G193500 , TraesCS6D02G179600 , TraesCS2A02G061000 , TraesCS2A02G061000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
2 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
3 Sobic.010G278200 expressed protein -
4 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
5 Sobic.007G093800 expressed protein -
6 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
7 Sobic.007G179800 TBC domain containing protein, expressed -
8 Sobic.003G302900 transcriptional regulator family protein, putative, expressed -
9 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
10 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
11 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
12 Sobic.010G020300 spastin, putative, expressed K13254: spastin
13 Sobic.004G261600 expressed protein -
14 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
15 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
16 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
17 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
18 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
19 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
20 Sobic.001G015800 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'


Gene co-expression network
sample Sobic006G033200 Sobic006G033200 Sobic010G130000 Sobic010G130000 Sobic006G033200--Sobic010G130000 Sobic008G124900 Sobic008G124900 Sobic006G033200--Sobic008G124900 Sobic010G278200 Sobic010G278200 Sobic006G033200--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic006G033200--Sobic009G138100 Sobic007G093800 Sobic007G093800 Sobic006G033200--Sobic007G093800 Sobic004G202500 Sobic004G202500 Sobic006G033200--Sobic004G202500 Sobic007G179800 Sobic007G179800 Sobic006G033200--Sobic007G179800 Sobic003G302900 Sobic003G302900 Sobic006G033200--Sobic003G302900 Sobic003G312200 Sobic003G312200 Sobic006G033200--Sobic003G312200 Sobic010G130000--Sobic006G033200 Sobic010G130000--Sobic010G278200 Sobic010G130000--Sobic009G138100 Sobic006G034000 Sobic006G034000 Sobic010G130000--Sobic006G034000 Sobic010G130000--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic010G130000--Sobic001G124200 Sobic001G390800 Sobic001G390800 Sobic010G130000--Sobic001G390800 Sobic001G085100 Sobic001G085100 Sobic010G130000--Sobic001G085100 Sobic010G130000--Sobic008G124900 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic010G147100 Sobic010G147100 Sobic010G278200--Sobic010G147100 Sobic010G278200--Sobic009G138100 Sobic010G278200--Sobic010G130000 Sobic010G278200--Sobic001G124200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic003G316500 Sobic003G316500 Sobic010G278200--Sobic003G316500 Sobic010G278200--Sobic008G124900 Sobic009G138100--Sobic010G278200 Sobic009G138100--Sobic010G130000 Sobic003G248200 Sobic003G248200 Sobic009G138100--Sobic003G248200 Sobic009G138100--Sobic001G124200 Sobic009G138100--Sobic006G033200 Sobic009G228700 Sobic009G228700 Sobic009G138100--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G138100--Sobic004G066200 Sobic009G219000 Sobic009G219000 Sobic009G138100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic009G138100--Sobic001G323000 Sobic007G093800--Sobic008G124900 Sobic007G093800--Sobic006G131000 Sobic004G178200 Sobic004G178200 Sobic007G093800--Sobic004G178200 Sobic007G093800--Sobic009G068500 Sobic008G046500 Sobic008G046500 Sobic007G093800--Sobic008G046500 Sobic007G093800--Sobic010G278200 Sobic003G264100 Sobic003G264100 Sobic007G093800--Sobic003G264100 Sobic004G092500 Sobic004G092500 Sobic007G093800--Sobic004G092500 Sobic007G218000 Sobic007G218000 Sobic007G093800--Sobic007G218000 Sobic004G202500--Sobic004G066200 Sobic004G202500--Sobic010G278200 Sobic003G099100 Sobic003G099100 Sobic004G202500--Sobic003G099100 Sobic004G202500--Sobic008G124900 Sobic001G193300 Sobic001G193300 Sobic004G202500--Sobic001G193300 Sobic006G101700 Sobic006G101700 Sobic004G202500--Sobic006G101700 Sobic001G007000 Sobic001G007000 Sobic004G202500--Sobic001G007000 Sobic004G202500--Sobic007G093800 Sobic004G202500--Sobic010G130000 Sobic006G092400 Sobic006G092400 Sobic007G179800--Sobic006G092400 Sobic001G121200 Sobic001G121200 Sobic007G179800--Sobic001G121200 Sobic007G179800--Sobic006G033200 Sobic003G220800 Sobic003G220800 Sobic007G179800--Sobic003G220800 Sobic010G020300 Sobic010G020300 Sobic007G179800--Sobic010G020300 Sobic007G179800--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic007G179800--Sobic002G311100 Sobic007G179800--Sobic010G147100 Sobic007G179800--Sobic003G312200 Sobic003G302900--Sobic006G033200 Sobic003G302900--Sobic002G311100 Sobic003G302900--Sobic010G147100 Sobic001G107600 Sobic001G107600 Sobic003G302900--Sobic001G107600 Sobic003G302900--Sobic010G278200 Sobic007G203300 Sobic007G203300 Sobic003G302900--Sobic007G203300 Sobic003G302900--Sobic003G264100 Sobic008G047400 Sobic008G047400 Sobic003G302900--Sobic008G047400 Sobic008G093000 Sobic008G093000 Sobic003G302900--Sobic008G093000 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic003G312200--Sobic001G085100 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.