Gene annotation
Transcriptome id Sobic.003G312200.1
Synonym Sb03g036030
Functional annotation signal recognition particle 54 kDa protein, putative, expressed
UniProt C5XLK5
Pfam PF02492 PF02881 PF02978
Panther DB PTHR11564 PTHR11564:SF5
NCBI CDD -
KEGG Orthology K03106; SRP54, signal recognition particle subunit SRP54
Gene Ontology GO:0006614; SRP-dependent cotranslational protein targeting to membrane GO:0005525GTP binding GO:00083127S RNA binding


Orthologs (automatic annotation)
TAIR AT1G48900 : Signal recognition particle, SRP54 subunit protein
RAP-DB (Rice) LOC_Os01g56600.1 : signal recognition particle 54 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a044178 , Zm00025a027356 , Zm00025a039919
Brachypodium KQK09989 , KQK05493
Barley HORVU1Hr1G077990.5 , HORVU1Hr1G077990.4 , HORVU1Hr1G077990.3 , HORVU1Hr1G077990.2 , HORVU1Hr1G077990.1 , HORVU2Hr1G020570.1 , HORVU2Hr1G020570.6 , HORVU2Hr1G020570.4 , HORVU2Hr1G020570.5 , HORVU2Hr1G020570.2 , HORVU2Hr1G020570.3
Wheat TraesCS3D02G308700 , TraesCS1D02G329300 , TraesCS1B02G340600 , TraesCS1A02G327200 , TraesCS3A02G322800
Populus -


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cDNA sequences
Sobic.003G312200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
2 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
3 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
4 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
5 Sobic.009G228700 expressed protein -
6 Sobic.001G261436 - -
7 Sobic.001G085100 expressed protein -
8 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
9 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
10 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
11 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
12 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
13 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
14 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
15 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
16 Sobic.004G003401 - -
17 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
18 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
19 Sobic.003G436300 expressed protein -
20 Sobic.003G153700 expressed protein -


Gene co-expression network
sample Sobic003G312200 Sobic003G312200 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic009G228700 Sobic009G228700 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic006G034000--Sobic003G312200 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic006G034000--Sobic010G130000 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic006G034000--Sobic009G228700 Sobic001G091300--Sobic009G228700 Sobic001G091300--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic001G091300--Sobic004G275700 Sobic004G066200 Sobic004G066200 Sobic001G091300--Sobic004G066200 Sobic001G091300--Sobic001G085100 Sobic001G512300 Sobic001G512300 Sobic001G091300--Sobic001G512300 Sobic001G091300--Sobic001G261436 Sobic001G199100 Sobic001G199100 Sobic001G091300--Sobic001G199100 Sobic002G303600 Sobic002G303600 Sobic001G091300--Sobic002G303600 Sobic001G323000--Sobic001G206900 Sobic001G323000--Sobic006G034000 Sobic001G323000--Sobic009G228700 Sobic001G057800 Sobic001G057800 Sobic001G323000--Sobic001G057800 Sobic001G323000--Sobic003G312200 Sobic001G323000--Sobic006G148200 Sobic009G207000 Sobic009G207000 Sobic001G323000--Sobic009G207000 Sobic010G000900 Sobic010G000900 Sobic001G323000--Sobic010G000900 Sobic001G323000--Sobic001G085100 Sobic001G206900--Sobic001G323000 Sobic001G206900--Sobic003G312200 Sobic004G010900 Sobic004G010900 Sobic001G206900--Sobic004G010900 Sobic004G181900 Sobic004G181900 Sobic001G206900--Sobic004G181900 Sobic001G206900--Sobic001G085100 Sobic009G149500 Sobic009G149500 Sobic001G206900--Sobic009G149500 Sobic001G206900--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G206900--Sobic007G167900 Sobic003G349300 Sobic003G349300 Sobic001G206900--Sobic003G349300 Sobic009G228700--Sobic004G066200 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic009G228700--Sobic001G323000 Sobic001G356600 Sobic001G356600 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic009G228700--Sobic006G148200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic001G261436--Sobic001G085100 Sobic001G047400 Sobic001G047400 Sobic001G261436--Sobic001G047400 Sobic001G261436--Sobic003G312200 Sobic001G261436--Sobic001G091300 Sobic001G261436--Sobic004G275700 Sobic001G261436--Sobic009G228700 Sobic001G007000 Sobic001G007000 Sobic001G261436--Sobic001G007000 Sobic009G192000 Sobic009G192000 Sobic001G261436--Sobic009G192000 Sobic009G222500 Sobic009G222500 Sobic001G261436--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G085100--Sobic001G261436 Sobic001G085100--Sobic006G148200 Sobic001G085100--Sobic007G167900 Sobic001G085100--Sobic001G206900 Sobic001G085100--Sobic001G047400 Sobic001G085100--Sobic004G066200 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic006G033200 Sobic006G033200 Sobic010G130000--Sobic006G033200 Sobic010G278200 Sobic010G278200 Sobic010G130000--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic010G130000--Sobic009G138100 Sobic010G130000--Sobic006G034000 Sobic010G130000--Sobic003G312200 Sobic010G130000--Sobic001G124200 Sobic001G390800 Sobic001G390800 Sobic010G130000--Sobic001G390800 Sobic010G130000--Sobic001G085100 Sobic008G124900 Sobic008G124900 Sobic010G130000--Sobic008G124900 Sobic008G103300 Sobic008G103300 Sobic005G074500--Sobic008G103300 Sobic005G074500--Sobic003G312200 Sobic005G074500--Sobic001G206900 Sobic001G449900 Sobic001G449900 Sobic005G074500--Sobic001G449900 Sobic003G337300 Sobic003G337300 Sobic005G074500--Sobic003G337300 Sobic001G426100 Sobic001G426100 Sobic005G074500--Sobic001G426100 Sobic004G323700 Sobic004G323700 Sobic005G074500--Sobic004G323700 Sobic001G431000 Sobic001G431000 Sobic005G074500--Sobic001G431000 Sobic010G020300 Sobic010G020300 Sobic005G074500--Sobic010G020300
Octagon: transcription factors


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