Gene annotation
Transcriptome id Sobic.006G249700.1
Synonym Sb06g031490, WIN2
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5Y9K6
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF352
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT4G31750 : HOPW1-1-interacting 2
RAP-DB (Rice) LOC_Os04g56450.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a009454
Brachypodium KQJ85043
Barley HORVU2Hr1G111340.2 , HORVU2Hr1G111340.3 , HORVU2Hr1G111340.1 , HORVU2Hr1G111340.4 , HORVU2Hr1G111370.3 , HORVU2Hr1G111370.2 , HORVU2Hr1G111370.1
Wheat TraesCS2D02G500400 , TraesCS2B02G528100 , TraesCS2B02G528100 , TraesCS2A02G500200
Populus PNS92080 , PNS92081 , PNS92082 , PNS92083


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cDNA sequences
Sobic.006G249700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G228700 expressed protein -
2 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
3 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
4 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
5 Sobic.002G352600 expressed protein -
6 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
7 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
8 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
9 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
10 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
11 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
12 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
13 Sobic.004G119200 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
14 Sobic.006G194500 expressed protein -
15 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
16 Sobic.008G050800 expressed protein -
17 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
18 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
19 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
20 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1


Gene co-expression network
sample Sobic006G249700 Sobic006G249700 Sobic009G228700 Sobic009G228700 Sobic006G249700--Sobic009G228700 Sobic009G207000 Sobic009G207000 Sobic006G249700--Sobic009G207000 Sobic004G348300 Sobic004G348300 Sobic006G249700--Sobic004G348300 Sobic003G312200 Sobic003G312200 Sobic006G249700--Sobic003G312200 Sobic002G352600 Sobic002G352600 Sobic006G249700--Sobic002G352600 Sobic004G275700 Sobic004G275700 Sobic006G249700--Sobic004G275700 Sobic001G323000 Sobic001G323000 Sobic006G249700--Sobic001G323000 Sobic006G148200 Sobic006G148200 Sobic006G249700--Sobic006G148200 Sobic009G138100 Sobic009G138100 Sobic006G249700--Sobic009G138100 Sobic004G066200 Sobic004G066200 Sobic009G228700--Sobic004G066200 Sobic009G228700--Sobic009G207000 Sobic001G091300 Sobic001G091300 Sobic009G228700--Sobic001G091300 Sobic009G228700--Sobic001G323000 Sobic001G356600 Sobic001G356600 Sobic009G228700--Sobic001G356600 Sobic009G228700--Sobic006G249700 Sobic009G228700--Sobic006G148200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic009G207000--Sobic009G228700 Sobic009G207000--Sobic004G066200 Sobic001G199100 Sobic001G199100 Sobic009G207000--Sobic001G199100 Sobic009G207000--Sobic001G323000 Sobic001G085100 Sobic001G085100 Sobic009G207000--Sobic001G085100 Sobic009G207000--Sobic006G249700 Sobic009G207000--Sobic006G148200 Sobic010G000900 Sobic010G000900 Sobic009G207000--Sobic010G000900 Sobic003G012200 Sobic003G012200 Sobic009G207000--Sobic003G012200 Sobic004G348300--Sobic003G012200 Sobic003G344900 Sobic003G344900 Sobic004G348300--Sobic003G344900 Sobic004G348300--Sobic001G199100 Sobic004G348300--Sobic002G352600 Sobic004G348300--Sobic006G249700 Sobic004G006200 Sobic004G006200 Sobic004G348300--Sobic004G006200 Sobic002G059300 Sobic002G059300 Sobic004G348300--Sobic002G059300 Sobic009G217100 Sobic009G217100 Sobic004G348300--Sobic009G217100 Sobic005G004200 Sobic005G004200 Sobic004G348300--Sobic005G004200 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic003G312200--Sobic001G091300 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic003G015900 Sobic003G015900 Sobic002G352600--Sobic003G015900 Sobic010G027600 Sobic010G027600 Sobic002G352600--Sobic010G027600 Sobic002G352600--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic002G352600--Sobic004G121100 Sobic002G352600--Sobic009G217100 Sobic001G121200 Sobic001G121200 Sobic002G352600--Sobic001G121200 Sobic002G352600--Sobic010G000900 Sobic002G352600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic002G352600--Sobic003G248200 Sobic004G275700--Sobic001G199100 Sobic004G275700--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic004G275700--Sobic009G075800 Sobic002G262900 Sobic002G262900 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic004G275700--Sobic003G012200 Sobic001G323000--Sobic001G206900 Sobic001G323000--Sobic006G034000 Sobic001G323000--Sobic009G228700 Sobic001G057800 Sobic001G057800 Sobic001G323000--Sobic001G057800 Sobic001G323000--Sobic003G312200 Sobic001G323000--Sobic006G148200 Sobic001G323000--Sobic009G207000 Sobic001G323000--Sobic010G000900 Sobic001G323000--Sobic001G085100 Sobic004G274400 Sobic004G274400 Sobic006G148200--Sobic004G274400 Sobic006G148200--Sobic001G085100 Sobic006G148200--Sobic006G034000 Sobic006G148200--Sobic001G323000 Sobic006G148200--Sobic009G228700 Sobic001G033500 Sobic001G033500 Sobic006G148200--Sobic001G033500 Sobic006G148200--Sobic001G206900 Sobic006G148200--Sobic010G000900 Sobic001G048700 Sobic001G048700 Sobic006G148200--Sobic001G048700 Sobic010G278200 Sobic010G278200 Sobic009G138100--Sobic010G278200 Sobic009G138100--Sobic010G130000 Sobic009G138100--Sobic003G248200 Sobic009G138100--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic009G138100--Sobic006G033200 Sobic009G138100--Sobic009G228700 Sobic009G138100--Sobic004G066200 Sobic009G219000 Sobic009G219000 Sobic009G138100--Sobic009G219000 Sobic009G138100--Sobic001G323000
Octagon: transcription factors


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