Gene annotation
Transcriptome id Sobic.004G066200.1
Synonym UFD1, Sb04g005550
Functional annotation ubiquitin fusion degradation protein, putative, expressed
UniProt C5XWW2
Pfam PF03152
Panther DB PTHR12555 PTHR12555:SF16
NCBI CDD KOG1816; Ubiquitin fusion-degradation protein
KEGG Orthology K14016; ubiquitin fusion degradation protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT2G21270 : ubiquitin fusion degradation 1
RAP-DB (Rice) LOC_Os02g08480.1 : ubiquitin fusion degradation protein, putative, expressed
MaizeGDB (Corn) Zm00025a034746
Brachypodium KQJ93675 , KQJ93674 , KQJ93676
Barley HORVU6Hr1G028730.2 , HORVU6Hr1G028730.1 , HORVU6Hr1G028730.3 , HORVU6Hr1G028730.4 , HORVU6Hr1G028730.5
Wheat TraesCS6A02G146700 , TraesCS6D02G136000 , TraesCS6B02G174900 , TraesCS6B02G174900
Populus -


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cDNA sequences
Sobic.004G066200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
2 Sobic.009G228700 expressed protein -
3 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
4 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
5 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
6 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
8 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
9 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
10 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
11 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
12 Sobic.009G222500 expressed protein -
13 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
14 Sobic.006G200600 expressed protein -
15 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
16 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
17 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
18 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
19 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
20 Sobic.001G085100 expressed protein -


Gene co-expression network
sample Sobic004G066200 Sobic004G066200 Sobic001G356600 Sobic001G356600 Sobic004G066200--Sobic001G356600 Sobic009G228700 Sobic009G228700 Sobic004G066200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic001G356600--Sobic004G066200 Sobic001G356600--Sobic003G248200 Sobic002G034600 Sobic002G034600 Sobic001G356600--Sobic002G034600 Sobic001G512700 Sobic001G512700 Sobic001G356600--Sobic001G512700 Sobic001G356600--Sobic009G228700 Sobic009G179700 Sobic009G179700 Sobic001G356600--Sobic009G179700 Sobic010G018700 Sobic010G018700 Sobic001G356600--Sobic010G018700 Sobic008G179700 Sobic008G179700 Sobic001G356600--Sobic008G179700 Sobic004G274200 Sobic004G274200 Sobic001G356600--Sobic004G274200 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic009G228700--Sobic001G323000 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G228700--Sobic006G148200 Sobic003G312200 Sobic003G312200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic006G101700--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic006G101700--Sobic001G080700 Sobic009G222500 Sobic009G222500 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G049700 Sobic006G049700 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic001G080700--Sobic001G392300 Sobic001G080700--Sobic009G165800 Sobic010G251000 Sobic010G251000 Sobic001G080700--Sobic010G251000 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic001G080700--Sobic009G222500 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic001G392300--Sobic004G353200 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic003G352200--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic003G352200--Sobic001G473600 Sobic003G352200--Sobic002G034600 Sobic003G352200--Sobic004G274200 Sobic003G155900 Sobic003G155900 Sobic003G352200--Sobic003G155900 Sobic003G352200--Sobic004G066200 Sobic002G045600 Sobic002G045600 Sobic003G352200--Sobic002G045600 Sobic001G109800 Sobic001G109800 Sobic003G352200--Sobic001G109800 Sobic001G088100 Sobic001G088100 Sobic003G352200--Sobic001G088100 Sobic003G248200--Sobic001G512700 Sobic003G248200--Sobic001G356600 Sobic003G248200--Sobic008G179700 Sobic003G248200--Sobic004G066200 Sobic003G248200--Sobic008G047800 Sobic003G248200--Sobic006G200600 Sobic003G081000 Sobic003G081000 Sobic003G248200--Sobic003G081000 Sobic003G248200--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic003G248200--Sobic002G297200 Sobic004G353200--Sobic006G200600 Sobic004G353200--Sobic001G392300 Sobic004G353200--Sobic007G075900 Sobic004G353200--Sobic001G007000 Sobic004G353200--Sobic004G066200 Sobic004G353200--Sobic008G047800 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic001G091300--Sobic009G228700 Sobic001G091300--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic001G091300--Sobic004G275700 Sobic001G091300--Sobic004G066200 Sobic001G091300--Sobic001G085100 Sobic001G091300--Sobic001G512300 Sobic001G261436 Sobic001G261436 Sobic001G091300--Sobic001G261436 Sobic001G199100 Sobic001G199100 Sobic001G091300--Sobic001G199100 Sobic002G303600 Sobic002G303600 Sobic001G091300--Sobic002G303600
Octagon: transcription factors


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