Gene annotation
Transcriptome id Sobic.006G200600.1
Synonym Sb06g027250
Functional annotation expressed protein
UniProt C5YF34
Pfam PF01883
Panther DB PTHR12377
NCBI CDD KOG3381; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68310 : Protein of unknown function (DUF59)
RAP-DB (Rice) LOC_Os04g50864.1 : expressed protein
MaizeGDB (Corn) Zm00025a009969 , Zm00025a056912
Brachypodium KQJ84339
Barley HORVU2Hr1G102860.2 , HORVU2Hr1G102860.1
Wheat TraesCS2D02G443400 , TraesCS2A02G444300 , TraesCS2B02G465400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
2 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
3 Sobic.004G121100 expressed protein -
4 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
5 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
6 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
7 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
8 Sobic.007G078600 YT521-B, putative, expressed -
9 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
10 Sobic.002G310200 expressed protein -
11 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
12 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
13 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
14 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
15 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
16 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
17 Sobic.003G102400 expressed protein -
18 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
19 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
20 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein


Gene co-expression network
sample Sobic006G200600 Sobic006G200600 Sobic004G353200 Sobic004G353200 Sobic006G200600--Sobic004G353200 Sobic001G281600 Sobic001G281600 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic001G392300 Sobic001G392300 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic008G047800 Sobic008G047800 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic004G353200--Sobic006G200600 Sobic004G353200--Sobic001G392300 Sobic007G075900 Sobic007G075900 Sobic004G353200--Sobic007G075900 Sobic001G007000 Sobic001G007000 Sobic004G353200--Sobic001G007000 Sobic004G066200 Sobic004G066200 Sobic004G353200--Sobic004G066200 Sobic004G353200--Sobic008G047800 Sobic004G274200 Sobic004G274200 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic004G121100--Sobic009G205200 Sobic004G121100--Sobic006G200600 Sobic006G228500 Sobic006G228500 Sobic004G121100--Sobic006G228500 Sobic004G121100--Sobic001G281600 Sobic009G259400 Sobic009G259400 Sobic004G121100--Sobic009G259400 Sobic004G121100--Sobic007G078500 Sobic001G080700 Sobic001G080700 Sobic004G121100--Sobic001G080700 Sobic002G350300 Sobic002G350300 Sobic004G121100--Sobic002G350300 Sobic004G121100--Sobic010G251000 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic001G392300--Sobic004G353200 Sobic001G392300--Sobic001G007000 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic001G392300--Sobic006G200600 Sobic010G251000--Sobic001G007000 Sobic010G251000--Sobic001G080700 Sobic010G251000--Sobic006G200600 Sobic010G251000--Sobic004G066200 Sobic010G251000--Sobic004G121100 Sobic010G251000--Sobic001G392300 Sobic001G047400 Sobic001G047400 Sobic010G251000--Sobic001G047400 Sobic010G251000--Sobic004G353200 Sobic008G046500 Sobic008G046500 Sobic010G251000--Sobic008G046500 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic009G205200--Sobic004G121100 Sobic001G107500 Sobic001G107500 Sobic009G205200--Sobic001G107500 Sobic009G205200--Sobic002G350300 Sobic007G104800 Sobic007G104800 Sobic009G205200--Sobic007G104800 Sobic009G205200--Sobic006G200600 Sobic003G345400 Sobic003G345400 Sobic009G205200--Sobic003G345400 Sobic001G119300 Sobic001G119300 Sobic009G205200--Sobic001G119300 Sobic009G205200--Sobic003G248200 Sobic009G205200--Sobic008G179700 Sobic007G078600--Sobic008G047800 Sobic003G394300 Sobic003G394300 Sobic007G078600--Sobic003G394300 Sobic003G084700 Sobic003G084700 Sobic007G078600--Sobic003G084700 Sobic006G118700 Sobic006G118700 Sobic007G078600--Sobic006G118700 Sobic007G078600--Sobic006G200600 Sobic009G179700 Sobic009G179700 Sobic007G078600--Sobic009G179700 Sobic007G078600--Sobic007G078500 Sobic002G134200 Sobic002G134200 Sobic007G078600--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic007G078600--Sobic002G133400 Sobic003G248200--Sobic001G512700 Sobic001G356600 Sobic001G356600 Sobic003G248200--Sobic001G356600 Sobic003G248200--Sobic008G179700 Sobic003G248200--Sobic004G066200 Sobic003G248200--Sobic008G047800 Sobic003G248200--Sobic006G200600 Sobic003G081000 Sobic003G081000 Sobic003G248200--Sobic003G081000 Sobic003G248200--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic003G248200--Sobic002G297200
Octagon: transcription factors


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