Gene annotation
Transcriptome id Sobic.008G179700.1
Synonym Sb08g022273, ATTBP2, TBP2
Functional annotation TATA-binding protein, putative, expressed
UniProt Q8W0R2 , C5YSH9
Pfam PF00352
Panther DB PTHR10126 PTHR10126:SF23
NCBI CDD KOG3302; TATA-box binding protein (TBP), component of TFIID and TFIIIB
KEGG Orthology K03120; TBP, transcription initiation factor TFIID TATA-box-binding protein
Gene Ontology GO:0006352; DNA-templated transcription, initiation GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G55520 : TATA binding protein 2
RAP-DB (Rice) LOC_Os03g45410.1 : TATA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007551
Brachypodium KQJ85709 , KQJ85710 , PNT62291 , PNT62290 , PNT62288 , PNT62289
Barley HORVU5Hr1G006000.11 , HORVU5Hr1G006000.10 , HORVU5Hr1G006000.13 , HORVU5Hr1G006000.12 , HORVU5Hr1G006000.15 , HORVU5Hr1G006000.14 , HORVU5Hr1G006000.17 , HORVU5Hr1G006000.16 , HORVU5Hr1G006000.18 , HORVU5Hr1G006000.5 , HORVU5Hr1G006000.4 , HORVU5Hr1G006000.7 , HORVU5Hr1G006000.6 , HORVU5Hr1G006000.1 , HORVU5Hr1G006000.3 , HORVU5Hr1G006000.2 , HORVU5Hr1G006000.9 , HORVU5Hr1G006000.8
Wheat TraesCS4A02G298000 , TraesCS5A02G022000 , TraesCS5A02G022000 , TraesCS5B02G018500
Populus -


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cDNA sequences
Sobic.008G179700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
2 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
3 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
4 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
6 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
7 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
8 Sobic.002G126500 RNA recognition motif containing protein, expressed -
9 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
10 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
11 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
12 Sobic.004G121100 expressed protein -
13 Sobic.002G034600 zinc ion binding protein, putative, expressed -
14 Sobic.007G078600 YT521-B, putative, expressed -
15 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
16 Sobic.006G200600 expressed protein -
17 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
18 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
19 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
20 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43


Gene co-expression network
sample Sobic008G179700 Sobic008G179700 Sobic002G350300 Sobic002G350300 Sobic008G179700--Sobic002G350300 Sobic003G248200 Sobic003G248200 Sobic008G179700--Sobic003G248200 Sobic001G281600 Sobic001G281600 Sobic008G179700--Sobic001G281600 Sobic001G356600 Sobic001G356600 Sobic008G179700--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic008G179700--Sobic009G179700 Sobic004G084300 Sobic004G084300 Sobic008G179700--Sobic004G084300 Sobic003G401100 Sobic003G401100 Sobic008G179700--Sobic003G401100 Sobic002G126500 Sobic002G126500 Sobic008G179700--Sobic002G126500 Sobic001G512700 Sobic001G512700 Sobic008G179700--Sobic001G512700 Sobic002G350300--Sobic008G179700 Sobic009G205200 Sobic009G205200 Sobic002G350300--Sobic009G205200 Sobic002G350300--Sobic009G179700 Sobic001G107500 Sobic001G107500 Sobic002G350300--Sobic001G107500 Sobic002G350300--Sobic001G512700 Sobic007G132400 Sobic007G132400 Sobic002G350300--Sobic007G132400 Sobic010G028300 Sobic010G028300 Sobic002G350300--Sobic010G028300 Sobic001G119300 Sobic001G119300 Sobic002G350300--Sobic001G119300 Sobic006G088100 Sobic006G088100 Sobic002G350300--Sobic006G088100 Sobic003G248200--Sobic001G512700 Sobic003G248200--Sobic001G356600 Sobic003G248200--Sobic008G179700 Sobic004G066200 Sobic004G066200 Sobic003G248200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic003G248200--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic003G248200--Sobic006G200600 Sobic003G081000 Sobic003G081000 Sobic003G248200--Sobic003G081000 Sobic004G274200 Sobic004G274200 Sobic003G248200--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic003G248200--Sobic002G297200 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic001G281600--Sobic006G200600 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic001G281600--Sobic008G179700 Sobic001G356600--Sobic004G066200 Sobic001G356600--Sobic003G248200 Sobic002G034600 Sobic002G034600 Sobic001G356600--Sobic002G034600 Sobic001G356600--Sobic001G512700 Sobic009G228700 Sobic009G228700 Sobic001G356600--Sobic009G228700 Sobic001G356600--Sobic009G179700 Sobic010G018700 Sobic010G018700 Sobic001G356600--Sobic010G018700 Sobic001G356600--Sobic008G179700 Sobic001G356600--Sobic004G274200 Sobic009G179700--Sobic002G350300 Sobic009G179700--Sobic001G356600 Sobic007G078600 Sobic007G078600 Sobic009G179700--Sobic007G078600 Sobic009G179700--Sobic010G018700 Sobic009G179700--Sobic008G179700 Sobic009G179700--Sobic007G078500 Sobic003G029100 Sobic003G029100 Sobic009G179700--Sobic003G029100 Sobic007G061000 Sobic007G061000 Sobic009G179700--Sobic007G061000 Sobic009G179700--Sobic001G512700 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic004G084300--Sobic007G132400 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic003G401100--Sobic001G281600 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic003G401100--Sobic004G274200 Sobic003G401100--Sobic003G241200 Sobic002G126500--Sobic010G236400 Sobic002G126500--Sobic003G029100 Sobic002G126500--Sobic003G241200 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic002G126500--Sobic008G179700 Sobic002G126500--Sobic003G081000 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800 Sobic001G512700--Sobic008G047800 Sobic001G512700--Sobic002G006900 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic001G512700--Sobic002G297200 Sobic001G512700--Sobic008G067600
Octagon: transcription factors


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