Gene annotation
Transcriptome id Sobic.003G248200.1,Sobic.003G248200.2
Synonym SSP4, Sb03g030460
Functional annotation NLI interacting factor-like phosphatase, putative, expressed
UniProt A0A1B6Q558
Pfam PF03031
Panther DB PTHR12210 PTHR12210:SF65
NCBI CDD KOG1605; TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46410 : SCP1-like small phosphatase 4
RAP-DB (Rice) LOC_Os01g47540.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a028139
Brachypodium KQK09074
Barley HORVU3Hr1G060430.8 , HORVU3Hr1G060430.9 , HORVU3Hr1G060430.10 , HORVU3Hr1G060430.2 , HORVU3Hr1G060430.3 , HORVU3Hr1G060430.1 , HORVU3Hr1G060430.6 , HORVU3Hr1G060430.7 , HORVU3Hr1G060430.4 , HORVU3Hr1G060430.5
Wheat TraesCS3B02G270300 , TraesCS3B02G270300 , TraesCS3D02G242300 , TraesCS3A02G242200 , TraesCS3A02G242200 , TraesCS3D02G242300 , TraesCS3B02G256600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
2 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
3 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
4 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
5 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
6 Sobic.006G200600 expressed protein -
7 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
8 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
9 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
10 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
11 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
12 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
13 Sobic.007G078600 YT521-B, putative, expressed -
14 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
15 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
16 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
17 Sobic.004G121100 expressed protein -
18 Sobic.004G117900 expressed protein -
19 Sobic.007G104800 expressed protein -
20 Sobic.002G034600 zinc ion binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G248200 Sobic003G248200 Sobic001G512700 Sobic001G512700 Sobic003G248200--Sobic001G512700 Sobic001G356600 Sobic001G356600 Sobic003G248200--Sobic001G356600 Sobic008G179700 Sobic008G179700 Sobic003G248200--Sobic008G179700 Sobic004G066200 Sobic004G066200 Sobic003G248200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic003G248200--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic003G248200--Sobic006G200600 Sobic003G081000 Sobic003G081000 Sobic003G248200--Sobic003G081000 Sobic004G274200 Sobic004G274200 Sobic003G248200--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic003G248200--Sobic002G297200 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic001G356600--Sobic004G066200 Sobic001G356600--Sobic003G248200 Sobic002G034600 Sobic002G034600 Sobic001G356600--Sobic002G034600 Sobic001G356600--Sobic001G512700 Sobic009G228700 Sobic009G228700 Sobic001G356600--Sobic009G228700 Sobic009G179700 Sobic009G179700 Sobic001G356600--Sobic009G179700 Sobic010G018700 Sobic010G018700 Sobic001G356600--Sobic010G018700 Sobic001G356600--Sobic008G179700 Sobic001G356600--Sobic004G274200 Sobic002G350300 Sobic002G350300 Sobic008G179700--Sobic002G350300 Sobic008G179700--Sobic003G248200 Sobic001G281600 Sobic001G281600 Sobic008G179700--Sobic001G281600 Sobic008G179700--Sobic001G356600 Sobic008G179700--Sobic009G179700 Sobic004G084300 Sobic004G084300 Sobic008G179700--Sobic004G084300 Sobic003G401100 Sobic003G401100 Sobic008G179700--Sobic003G401100 Sobic002G126500 Sobic002G126500 Sobic008G179700--Sobic002G126500 Sobic008G179700--Sobic001G512700 Sobic004G066200--Sobic001G356600 Sobic004G066200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic006G200600--Sobic004G353200 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic006G200600--Sobic003G248200 Sobic007G118200 Sobic007G118200 Sobic003G081000--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic009G198100 Sobic009G198100 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic010G033400 Sobic010G033400 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic003G081000--Sobic004G350100 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic003G397800 Sobic003G397800 Sobic002G297200--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic002G297200--Sobic010G101800 Sobic002G297200--Sobic001G512700 Sobic002G297200--Sobic004G146500 Sobic002G297200--Sobic008G047800 Sobic001G109800 Sobic001G109800 Sobic002G297200--Sobic001G109800 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G297200--Sobic002G006900
Octagon: transcription factors


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