Gene annotation
Transcriptome id Sobic.008G047800.1,Sobic.008G047800.2
Synonym Sb08g004050, LRS1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6PBR5 , C6JSG6 , A0A1B6PBH4
Pfam PF00400 PF11816
Panther DB PTHR19862 PTHR19862:SF14
NCBI CDD -
KEGG Orthology K15361; WDR48, WD repeat-containing protein 48
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G05090 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os12g06810.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025776 , Zm00025a053995 , Zm00025a003723
Brachypodium KQJ92121 , PNT65399
Barley HORVU5Hr1G039370.5 , HORVU5Hr1G039370.4 , HORVU5Hr1G039370.1 , HORVU5Hr1G039370.3 , HORVU5Hr1G039370.2
Wheat TraesCS5A02G122900 , TraesCS5A02G122900 , TraesCS5A02G122900 , TraesCS5D02G131000 , TraesCS5D02G131000 , TraesCS5D02G131000 , TraesCS5D02G131000 , TraesCS5B02G122700 , TraesCS5B02G122700
Populus -


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cDNA sequences
Sobic.008G047800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
3 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
4 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
5 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
6 Sobic.007G011300 SGR2, putative, expressed -
7 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
8 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
9 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
10 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
11 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
12 Sobic.010G069100 expressed protein -
13 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
14 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
15 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
16 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
17 Sobic.001G363500 DIRP family protein, putative, expressed -
18 Sobic.003G372700 expressed protein -
19 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
20 Sobic.009G191000 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic008G047800 Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic001G512700--Sobic008G047800 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic001G512700--Sobic008G067600 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic001G155000--Sobic003G200200 Sobic001G155000--Sobic009G040600 Sobic001G155000--Sobic001G222500 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic001G155000--Sobic007G217000 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic008G028700 Sobic008G028700 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic007G011300--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G011300--Sobic009G166300 Sobic007G011300--Sobic001G155000 Sobic007G011300--Sobic002G006900 Sobic007G011300--Sobic005G112300 Sobic007G011300--Sobic007G217000 Sobic007G011300--Sobic009G040600 Sobic002G112700 Sobic002G112700 Sobic007G011300--Sobic002G112700 Sobic001G114000 Sobic001G114000 Sobic007G011300--Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic001G474600 Sobic001G474600 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G217000--Sobic007G118600 Sobic002G310200 Sobic002G310200 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic004G274200--Sobic008G047800 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic004G274200--Sobic001G114000 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900
Octagon: transcription factors


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