Gene annotation
Transcriptome id Sobic.003G372700.1
Synonym Sb03g041330
Functional annotation expressed protein
UniProt C5XRB0
Pfam -
Panther DB PTHR15000 PTHR15000:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G35660 : -
RAP-DB (Rice) LOC_Os01g65320.1 : expressed protein
MaizeGDB (Corn) Zm00025a026630
Brachypodium KQK10833
Barley HORVU3Hr1G082240.9 , HORVU3Hr1G082240.8 , HORVU3Hr1G082240.5 , HORVU3Hr1G082240.4 , HORVU3Hr1G082240.7 , HORVU3Hr1G082240.6 , HORVU3Hr1G082240.1 , HORVU3Hr1G082240.3 , HORVU3Hr1G082240.2 , HORVU3Hr1G082240.19 , HORVU3Hr1G082240.18 , HORVU3Hr1G082240.11 , HORVU3Hr1G082240.10 , HORVU3Hr1G082240.13 , HORVU3Hr1G082240.12 , HORVU3Hr1G082240.15 , HORVU3Hr1G082240.14 , HORVU3Hr1G082240.17 , HORVU3Hr1G082240.16
Wheat TraesCS3B02G416100 , TraesCS3A02G383700 , TraesCS3A02G383700 , TraesCS3B02G416100 , TraesCS3D02G376800 , TraesCS3D02G376800 , TraesCS3B02G416100 , TraesCS3B02G416100
Populus -


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cDNA sequences
Sobic.003G372700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
3 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
4 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
5 Sobic.002G191800 - -
6 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
7 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
8 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
9 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
10 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
11 Sobic.002G180666 - -
12 Sobic.006G032500 - -
13 Sobic.001G205200 expressed protein -
14 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
15 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.008G084700 - -
17 Sobic.001G241200 protein kinase domain containing protein, expressed -
18 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
19 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
20 Sobic.007G167500 expressed protein -


Gene co-expression network
sample Sobic003G372700 Sobic003G372700 Sobic002G006900 Sobic002G006900 Sobic003G372700--Sobic002G006900 Sobic003G119000 Sobic003G119000 Sobic003G372700--Sobic003G119000 Sobic007G065400 Sobic007G065400 Sobic003G372700--Sobic007G065400 Sobic005G112300 Sobic005G112300 Sobic003G372700--Sobic005G112300 Sobic002G191800 Sobic002G191800 Sobic003G372700--Sobic002G191800 Sobic009G040600 Sobic009G040600 Sobic003G372700--Sobic009G040600 Sobic002G309600 Sobic002G309600 Sobic003G372700--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic003G372700--Sobic003G280800 Sobic001G474600 Sobic001G474600 Sobic003G372700--Sobic001G474600 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic003G119000--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic003G119000--Sobic001G241200 Sobic007G065400--Sobic002G006900 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500 Sobic002G191800--Sobic007G065400 Sobic002G191800--Sobic003G372700 Sobic002G180666 Sobic002G180666 Sobic002G191800--Sobic002G180666 Sobic002G191800--Sobic002G006900 Sobic010G201500 Sobic010G201500 Sobic002G191800--Sobic010G201500 Sobic002G191800--Sobic001G241200 Sobic007G096600 Sobic007G096600 Sobic002G191800--Sobic007G096600 Sobic010G277500 Sobic010G277500 Sobic002G191800--Sobic010G277500 Sobic002G191800--Sobic003G119000 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G280800--Sobic003G119000 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G280800--Sobic003G372700 Sobic001G474600--Sobic003G280800 Sobic009G166300 Sobic009G166300 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic001G474600--Sobic003G372700 Sobic007G217000 Sobic007G217000 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic009G191000 Sobic009G191000 Sobic001G474600--Sobic009G191000 Sobic001G474600--Sobic001G241200
Octagon: transcription factors


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