Gene annotation
Transcriptome id Sobic.003G081000.1
Synonym Sb03g006790, TGA6, BZIP45
Functional annotation transcription factor, putative, expressed
UniProt C5XQR1
Pfam PF00170 PF14144
Panther DB PTHR22952 PTHR22952:SF206
NCBI CDD -
KEGG Orthology K14431; transcription factor TGA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G12250 : TGACG motif-binding factor 6
RAP-DB (Rice) LOC_Os01g17260.1 : transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a049215 , Zm00025a035188
Brachypodium PNT70360 , KQK03953 , KQK14553 , KQK14554
Barley HORVU2Hr1G016580.2 , HORVU2Hr1G016580.3 , HORVU2Hr1G016580.1 , HORVU2Hr1G016580.6 , HORVU2Hr1G016580.4 , HORVU2Hr1G016580.5 , HORVU3Hr1G042790.19 , HORVU3Hr1G042790.18 , HORVU3Hr1G042790.13 , HORVU3Hr1G042790.12 , HORVU3Hr1G042790.11 , HORVU3Hr1G042790.10 , HORVU3Hr1G042790.17 , HORVU3Hr1G042790.16 , HORVU3Hr1G042790.15 , HORVU3Hr1G042790.14 , HORVU3Hr1G042790.21 , HORVU3Hr1G042790.9 , HORVU3Hr1G042790.8 , HORVU3Hr1G042790.3 , HORVU3Hr1G042790.2 , HORVU3Hr1G042790.1 , HORVU3Hr1G042790.7 , HORVU3Hr1G042790.6 , HORVU3Hr1G042790.5 , HORVU3Hr1G042790.4 , HORVU3Hr1G042830.2 , HORVU3Hr1G042830.1 , HORVU3Hr1G042790.22 , HORVU3Hr1G042790.20
Wheat TraesCS3D02G194800 , TraesCS2D02G096800 , TraesCS2D02G096800 , TraesCS2D02G096800 , TraesCS3B02G220400 , TraesCS3B02G220400 , TraesCS3B02G220400 , TraesCS2A02G097500 , TraesCS2A02G097500 , TraesCS2A02G097500 , TraesCS3D02G194800 , TraesCS3D02G194800 , TraesCS3D02G194800 , TraesCS3A02G190700 , TraesCS3A02G190700 , TraesCS3A02G190700 , TraesCS2B02G113200 , TraesCS2B02G113200 , TraesCS2B02G113200
Populus PNT52395 , PNT52394 , PNT52397 , PNT52396 , PNT52399 , PNT52398 , PNT46481 , PNT46482 , PNT46483 , PNT46484 , PNT46485 , PNT46486 , PNT46487 , PNT46488 , PNT52401 , PNT52400 , PNT52403 , PNT52402 , PNT35558 , PNT35559 , PNT27823 , PNT27822 , PNT27821 , PNT35561 , PNT35560 , PNT35562


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cDNA sequences
Sobic.003G081000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
2 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
3 Sobic.002G034600 zinc ion binding protein, putative, expressed -
4 Sobic.004G205600 bromodomain domain containing protein, expressed -
5 Sobic.009G198100 expressed protein -
6 Sobic.006G252700 protein kinase domain containing protein, expressed -
7 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
8 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
9 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
10 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
11 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
12 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
13 Sobic.001G131800 expressed protein K15186: ELL-associated factor
14 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
15 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
16 Sobic.007G104800 expressed protein -
17 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
18 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
19 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
20 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter


Gene co-expression network
sample Sobic003G081000 Sobic003G081000 Sobic007G118200 Sobic007G118200 Sobic003G081000--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic003G081000--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic009G198100 Sobic009G198100 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic010G033400 Sobic010G033400 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic003G081000--Sobic004G350100 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic001G028400 Sobic001G028400 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic010G260500 Sobic010G260500 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic008G174300--Sobic003G081000 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic003G359300 Sobic003G359300 Sobic008G174300--Sobic003G359300 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic002G034600--Sobic003G355000 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic004G057400 Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic001G090400 Sobic001G090400 Sobic004G205600--Sobic001G090400 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic009G198100--Sobic007G118200 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic009G198100--Sobic001G131800 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic006G252700--Sobic003G081000 Sobic006G252700--Sobic001G466700 Sobic006G252700--Sobic004G350100 Sobic001G143500 Sobic001G143500 Sobic006G252700--Sobic001G143500 Sobic006G252700--Sobic007G118200 Sobic006G278700 Sobic006G278700 Sobic006G252700--Sobic006G278700 Sobic003G401100 Sobic003G401100 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic006G252700--Sobic002G034600 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic010G033400--Sobic009G198100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G033400--Sobic010G260500 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic010G033400--Sobic001G131800 Sobic001G466700--Sobic006G252700 Sobic001G466700--Sobic003G081000 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic004G021100 Sobic004G021100 Sobic001G466700--Sobic004G021100 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic001G466700--Sobic007G118200 Sobic004G350100--Sobic007G118200 Sobic004G350100--Sobic010G033400 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic004G350100--Sobic001G143500 Sobic004G350100--Sobic001G028400
Octagon: transcription factors


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