Gene annotation
Transcriptome id Sobic.004G353200.1
Synonym Sb04g037990, RPN5A, MSA, EMB2107
Functional annotation proteasome subunit, putative, expressed
UniProt C5XWM5 , A0A109NDV1
Pfam PF01399
Panther DB PTHR10855 PTHR10855:SF1
NCBI CDD -
KEGG Orthology K03035; PSMD12, 26S proteasome regulatory subunit N5
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G09900 : 26S proteasome regulatory subunit, putative (RPN5)
RAP-DB (Rice) LOC_Os03g63430.1 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a036038 , Zm00025a022655 , Zm00025a016324
Brachypodium KQK14676 , KQK12088
Barley HORVU5Hr1G122430.1 , HORVU5Hr1G122430.3 , HORVU5Hr1G122430.2 , HORVU5Hr1G122430.4 , HORVU5Hr1G122560.2 , HORVU5Hr1G122560.1
Wheat TraesCS5B02G544500 , TraesCS5D02G543600 , TraesCS4A02G329600 , TraesCS4A02G329600
Populus -


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cDNA sequences
Sobic.004G353200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G200600 expressed protein -
2 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
3 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
4 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
5 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
6 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
7 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
8 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
9 Sobic.003G102400 expressed protein -
10 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
11 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
12 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
13 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
14 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
15 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
16 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
17 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
18 Sobic.007G061000 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
19 Sobic.009G228700 expressed protein -
20 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1


Gene co-expression network
sample Sobic004G353200 Sobic004G353200 Sobic006G200600 Sobic006G200600 Sobic004G353200--Sobic006G200600 Sobic001G392300 Sobic001G392300 Sobic004G353200--Sobic001G392300 Sobic007G075900 Sobic007G075900 Sobic004G353200--Sobic007G075900 Sobic001G007000 Sobic001G007000 Sobic004G353200--Sobic001G007000 Sobic004G066200 Sobic004G066200 Sobic004G353200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic004G353200--Sobic008G047800 Sobic004G274200 Sobic004G274200 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic006G200600--Sobic004G353200 Sobic001G281600 Sobic001G281600 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic001G392300--Sobic004G353200 Sobic001G392300--Sobic001G007000 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic001G392300--Sobic006G200600 Sobic007G075900--Sobic004G353200 Sobic007G075900--Sobic001G392300 Sobic007G075900--Sobic009G177500 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic007G075900--Sobic004G274200 Sobic003G401100 Sobic003G401100 Sobic007G075900--Sobic003G401100 Sobic004G084300 Sobic004G084300 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic009G068500 Sobic009G068500 Sobic001G007000--Sobic009G068500 Sobic001G007000--Sobic010G251000 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic001G356600 Sobic001G356600 Sobic004G066200--Sobic001G356600 Sobic009G228700 Sobic009G228700 Sobic004G066200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic004G066200--Sobic006G101700 Sobic004G066200--Sobic001G080700 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic004G066200--Sobic003G248200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic004G274200--Sobic003G352200 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic006G012500 Sobic006G012500 Sobic010G053800--Sobic006G012500 Sobic010G275500 Sobic010G275500 Sobic010G053800--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic010G053800--Sobic004G072100 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic010G053800--Sobic004G039600 Sobic001G451400 Sobic001G451400 Sobic003G102400--Sobic001G451400 Sobic001G441400 Sobic001G441400 Sobic003G102400--Sobic001G441400 Sobic003G102400--Sobic006G200600 Sobic003G102400--Sobic004G353200 Sobic005G027400 Sobic005G027400 Sobic003G102400--Sobic005G027400 Sobic003G102400--Sobic002G359400 Sobic001G522600 Sobic001G522600 Sobic003G102400--Sobic001G522600 Sobic003G102400--Sobic009G044800 Sobic006G252900 Sobic006G252900 Sobic003G102400--Sobic006G252900
Octagon: transcription factors


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