Gene annotation
Transcriptome id Sobic.010G053800.1,Sobic.010G053800.2
Synonym
Functional annotation AP-1 complex subunit gamma-1, putative, expressed
UniProt A0A194YHG9 , A0A194YHF3
Pfam PF02883 PF01602
Panther DB PTHR22780 PTHR22780:SF27
NCBI CDD -
KEGG Orthology K12391; AP-1 complex subunit gamma-1
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT1G60070 : Adaptor protein complex AP-1, gamma subunit
RAP-DB (Rice) LOC_Os06g07090.1,LOC_Os06g07090.2 : AP-1 complex subunit gamma-1, putative, expressed
MaizeGDB (Corn) Zm00025a000827 , Zm00025a032883 , Zm00025a040700 , Zm00025a049898 , Zm00025a041641
Brachypodium KQK19433 , KQK01236 , KQK19436 , KQK19434 , KQK19435 , KQK01235 , KQK01234 , PNT76448 , KQK01231 , KQK01232 , PNT76443 , PNT76447 , PNT76446 , PNT76445 , PNT76444 , PNT69392
Barley HORVU7Hr1G027050.20 , HORVU7Hr1G027050.21 , HORVU7Hr1G027050.22 , HORVU7Hr1G027050.23 , HORVU7Hr1G027050.19 , HORVU7Hr1G027050.18 , HORVU7Hr1G027050.11 , HORVU7Hr1G027050.10 , HORVU7Hr1G027050.13 , HORVU7Hr1G027050.12 , HORVU7Hr1G027050.15 , HORVU7Hr1G027050.14 , HORVU7Hr1G027050.17 , HORVU7Hr1G027050.16 , HORVU7Hr1G027050.9 , HORVU7Hr1G027050.8 , HORVU7Hr1G027050.5 , HORVU7Hr1G027050.4 , HORVU7Hr1G027050.7 , HORVU7Hr1G027050.6 , HORVU7Hr1G027050.1 , HORVU7Hr1G027050.3 , HORVU7Hr1G027050.2 , HORVU6Hr1G087920.10 , HORVU6Hr1G087920.11 , HORVU6Hr1G087920.12 , HORVU6Hr1G087920.8 , HORVU6Hr1G087920.9 , HORVU6Hr1G087920.6 , HORVU6Hr1G087920.7 , HORVU6Hr1G087920.4 , HORVU6Hr1G087920.5 , HORVU6Hr1G087920.2 , HORVU6Hr1G087920.3 , HORVU6Hr1G087920.1
Wheat TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS6B02G410900 , TraesCS7D02G128900 , TraesCS7D02G128900 , TraesCS7D02G128900 , TraesCS6B02G410900 , TraesCS6D02G357400 , TraesCS6B02G410900 , TraesCS6B02G410900 , TraesCS6B02G410900 , TraesCS7D02G128900 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS6A02G373200 , TraesCS6A02G373200
Populus -


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cDNA sequences
Sobic.010G053800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
2 Sobic.010G275500 EF hand family protein, putative, expressed -
3 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
4 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
5 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
6 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
7 Sobic.010G116600 FHA domain containing protein, putative, expressed -
8 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
9 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
10 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
11 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
12 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
13 Sobic.001G114000 expressed protein -
14 Sobic.010G118950 - -
15 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
16 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
17 Sobic.002G310200 expressed protein -
18 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
19 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
20 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic010G053800 Sobic010G053800 Sobic006G012500 Sobic006G012500 Sobic010G053800--Sobic006G012500 Sobic010G275500 Sobic010G275500 Sobic010G053800--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic008G047800 Sobic008G047800 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic010G053800--Sobic004G039600 Sobic006G012500--Sobic004G039600 Sobic006G012500--Sobic010G053800 Sobic008G099800 Sobic008G099800 Sobic006G012500--Sobic008G099800 Sobic006G012500--Sobic010G275500 Sobic006G012500--Sobic004G072100 Sobic001G534800 Sobic001G534800 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic007G132100 Sobic007G132100 Sobic006G012500--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G012500--Sobic007G218000 Sobic010G275500--Sobic010G053800 Sobic010G275500--Sobic004G072100 Sobic010G275500--Sobic006G012500 Sobic010G275500--Sobic001G155000 Sobic010G275500--Sobic010G116600 Sobic010G069100 Sobic010G069100 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic002G397500 Sobic002G397500 Sobic010G275500--Sobic002G397500 Sobic004G072100--Sobic007G218000 Sobic004G072100--Sobic010G053800 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic004G072100--Sobic010G069100 Sobic004G072100--Sobic010G116600 Sobic004G072100--Sobic008G047800 Sobic004G072100--Sobic001G155000 Sobic001G155000--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic009G040600 Sobic009G040600 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic003G187500--Sobic010G053800 Sobic003G187500--Sobic004G072100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic003G187500--Sobic010G275500 Sobic003G187500--Sobic008G047800 Sobic003G187500--Sobic004G039600 Sobic003G187500--Sobic006G012500 Sobic010G236400 Sobic010G236400 Sobic003G187500--Sobic010G236400 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic002G071500 Sobic002G071500 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic003G093800 Sobic003G093800 Sobic010G116600--Sobic003G093800 Sobic009G044800 Sobic009G044800 Sobic010G116600--Sobic009G044800 Sobic010G116600--Sobic004G072100 Sobic010G116600--Sobic010G236400 Sobic010G116600--Sobic010G275500 Sobic003G408600 Sobic003G408600 Sobic010G116600--Sobic003G408600 Sobic010G116600--Sobic010G053800 Sobic010G204400 Sobic010G204400 Sobic006G163800--Sobic010G204400 Sobic001G369000 Sobic001G369000 Sobic006G163800--Sobic001G369000 Sobic006G131000 Sobic006G131000 Sobic006G163800--Sobic006G131000 Sobic006G163800--Sobic010G053800 Sobic006G163800--Sobic007G218000 Sobic006G163800--Sobic010G275500 Sobic006G163800--Sobic006G012500 Sobic006G163800--Sobic004G039600 Sobic004G146500 Sobic004G146500 Sobic006G163800--Sobic004G146500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500
Octagon: transcription factors


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