Gene annotation
Transcriptome id Sobic.003G187500.1
Synonym Sb03g025250
Functional annotation ATP-binding region, ATPase-like domain containing protein, expressed
UniProt C5XN19
Pfam PF13589
Panther DB PTHR23336 PTHR23336:SF19
NCBI CDD KOG1845; MORC family ATPases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19100 : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
RAP-DB (Rice) LOC_Os01g36840.1 : ATP-binding region, ATPase-like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028783
Brachypodium KQK08257 , PNT72177 , KQK08260 , KQK08258 , KQK08259 , KQK08254 , KQK08255 , KQK08256 , KQK08253
Barley HORVU3Hr1G046280.8 , HORVU3Hr1G046280.1 , HORVU3Hr1G046280.3 , HORVU3Hr1G046280.2 , HORVU3Hr1G046280.5 , HORVU3Hr1G046280.4 , HORVU3Hr1G046280.7 , HORVU3Hr1G046280.6
Wheat TraesCS3D02G202400 , TraesCS3B02G231900 , TraesCS3B02G231900 , TraesCS3A02G192600 , TraesCS3A02G192600
Populus -


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cDNA sequences
Sobic.003G187500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
2 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
3 Sobic.007G132100 myrosinase precursor, putative, expressed -
4 Sobic.002G310200 expressed protein -
5 Sobic.010G275500 EF hand family protein, putative, expressed -
6 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
7 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
8 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
9 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
10 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
11 Sobic.010G204400 phox domain-containing protein, putative, expressed -
12 Sobic.006G138000 expressed protein -
13 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
14 Sobic.004G158700 copine, putative, expressed -
15 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
16 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
17 Sobic.004G002400 expressed protein -
18 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
19 Sobic.008G131000 domain of unknown function family protein, expressed -
20 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1


Gene co-expression network
sample Sobic003G187500 Sobic003G187500 Sobic010G053800 Sobic010G053800 Sobic003G187500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic003G187500--Sobic004G072100 Sobic007G132100 Sobic007G132100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic008G047800 Sobic008G047800 Sobic003G187500--Sobic008G047800 Sobic004G039600 Sobic004G039600 Sobic003G187500--Sobic004G039600 Sobic006G012500 Sobic006G012500 Sobic003G187500--Sobic006G012500 Sobic010G236400 Sobic010G236400 Sobic003G187500--Sobic010G236400 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic010G053800--Sobic004G039600 Sobic007G218000 Sobic007G218000 Sobic004G072100--Sobic007G218000 Sobic004G072100--Sobic010G053800 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic010G069100 Sobic010G069100 Sobic004G072100--Sobic010G069100 Sobic004G072100--Sobic010G116600 Sobic004G072100--Sobic008G047800 Sobic004G072100--Sobic001G155000 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic006G131000 Sobic006G131000 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic009G044800 Sobic009G044800 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic007G217000 Sobic007G217000 Sobic002G310200--Sobic007G217000 Sobic004G084300 Sobic004G084300 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic004G067700 Sobic004G067700 Sobic002G310200--Sobic004G067700 Sobic010G275500--Sobic010G053800 Sobic010G275500--Sobic004G072100 Sobic010G275500--Sobic006G012500 Sobic010G275500--Sobic001G155000 Sobic010G275500--Sobic010G116600 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic002G397500 Sobic002G397500 Sobic010G275500--Sobic002G397500 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic006G012500--Sobic004G039600 Sobic006G012500--Sobic010G053800 Sobic006G012500--Sobic008G099800 Sobic006G012500--Sobic010G275500 Sobic006G012500--Sobic004G072100 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic006G012500--Sobic007G132100 Sobic006G012500--Sobic007G218000 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic010G236400--Sobic004G274200 Sobic010G236400--Sobic010G116600 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100
Octagon: transcription factors


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