Gene annotation
Transcriptome id Sobic.006G195700.1
Synonym Sb06g026820
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5YEP3
Pfam PF00400
Panther DB PTHR19861 PTHR19861:SF3
NCBI CDD KOG1446; Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2
KEGG Orthology K14962; WDR82, SWD2, COMPASS component SWD2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G66240 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g40030.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010015 , Zm00025a044874
Brachypodium KQJ88637 , PNT63691 , PNT63692 , PNT63693 , PNT63694 , PNT63695 , KQJ88636
Barley HORVU4Hr1G012500.8 , HORVU4Hr1G012500.9 , HORVU4Hr1G012500.4 , HORVU4Hr1G012500.5 , HORVU4Hr1G012500.6 , HORVU4Hr1G012500.7 , HORVU4Hr1G012500.1 , HORVU4Hr1G012500.2 , HORVU4Hr1G012500.3 , HORVU4Hr1G012500.16 , HORVU4Hr1G012500.17 , HORVU4Hr1G012500.14 , HORVU4Hr1G012500.15 , HORVU4Hr1G012500.12 , HORVU4Hr1G012500.13 , HORVU4Hr1G012500.10 , HORVU4Hr1G012500.11
Wheat TraesCS4D02G074000 , TraesCS4A02G239700 , TraesCS4B02G075300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G204400 phox domain-containing protein, putative, expressed -
2 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
3 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
4 Sobic.002G056701 - -
5 Sobic.002G310200 expressed protein -
6 Sobic.002G260400 - -
7 Sobic.010G245000 DTW domain containing protein, putative, expressed -
8 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
9 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
10 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
11 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
12 Sobic.003G187200 phox domain-containing protein, putative, expressed -
13 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
14 Sobic.007G132100 myrosinase precursor, putative, expressed -
15 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
16 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
17 Sobic.006G204800 APO, putative, expressed -
18 Sobic.003G289400 farnesyltransferase subunit beta, putative, expressed K05954: protein farnesyltransferase subunit beta
19 Sobic.010G116600 FHA domain containing protein, putative, expressed -
20 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -


Gene co-expression network
sample Sobic006G195700 Sobic006G195700 Sobic010G204400 Sobic010G204400 Sobic006G195700--Sobic010G204400 Sobic009G245800 Sobic009G245800 Sobic006G195700--Sobic009G245800 Sobic010G236400 Sobic010G236400 Sobic006G195700--Sobic010G236400 Sobic002G056701 Sobic002G056701 Sobic006G195700--Sobic002G056701 Sobic002G310200 Sobic002G310200 Sobic006G195700--Sobic002G310200 Sobic002G260400 Sobic002G260400 Sobic006G195700--Sobic002G260400 Sobic010G245000 Sobic010G245000 Sobic006G195700--Sobic010G245000 Sobic006G173100 Sobic006G173100 Sobic006G195700--Sobic006G173100 Sobic003G187500 Sobic003G187500 Sobic006G195700--Sobic003G187500 Sobic006G163800 Sobic006G163800 Sobic010G204400--Sobic006G163800 Sobic010G204400--Sobic006G195700 Sobic007G218000 Sobic007G218000 Sobic010G204400--Sobic007G218000 Sobic008G153000 Sobic008G153000 Sobic010G204400--Sobic008G153000 Sobic010G204400--Sobic010G236400 Sobic007G132100 Sobic007G132100 Sobic010G204400--Sobic007G132100 Sobic003G416700 Sobic003G416700 Sobic010G204400--Sobic003G416700 Sobic006G131000 Sobic006G131000 Sobic010G204400--Sobic006G131000 Sobic010G116600 Sobic010G116600 Sobic010G204400--Sobic010G116600 Sobic010G053800 Sobic010G053800 Sobic009G245800--Sobic010G053800 Sobic003G404500 Sobic003G404500 Sobic009G245800--Sobic003G404500 Sobic004G072100 Sobic004G072100 Sobic009G245800--Sobic004G072100 Sobic008G047800 Sobic008G047800 Sobic009G245800--Sobic008G047800 Sobic006G208500 Sobic006G208500 Sobic009G245800--Sobic006G208500 Sobic009G245800--Sobic006G195700 Sobic009G245800--Sobic002G310200 Sobic004G135400 Sobic004G135400 Sobic009G245800--Sobic004G135400 Sobic003G443100 Sobic003G443100 Sobic009G245800--Sobic003G443100 Sobic004G084300 Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic002G056701--Sobic010G245000 Sobic002G056701--Sobic002G260400 Sobic002G056701--Sobic007G218000 Sobic002G056701--Sobic006G195700 Sobic002G056701--Sobic004G072100 Sobic008G149800 Sobic008G149800 Sobic002G056701--Sobic008G149800 Sobic008G173100 Sobic008G173100 Sobic002G056701--Sobic008G173100 Sobic001G515000 Sobic001G515000 Sobic002G056701--Sobic001G515000 Sobic002G056701--Sobic010G053800 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic007G217000 Sobic007G217000 Sobic002G310200--Sobic007G217000 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic004G067700 Sobic004G067700 Sobic002G310200--Sobic004G067700 Sobic002G260400--Sobic008G173100 Sobic002G260400--Sobic002G056701 Sobic002G063900 Sobic002G063900 Sobic002G260400--Sobic002G063900 Sobic002G370900 Sobic002G370900 Sobic002G260400--Sobic002G370900 Sobic006G116100 Sobic006G116100 Sobic002G260400--Sobic006G116100 Sobic002G260400--Sobic008G153000 Sobic002G260400--Sobic010G236400 Sobic002G083500 Sobic002G083500 Sobic002G260400--Sobic002G083500 Sobic002G260400--Sobic010G245000 Sobic010G245000--Sobic002G056701 Sobic001G176200 Sobic001G176200 Sobic010G245000--Sobic001G176200 Sobic004G345700 Sobic004G345700 Sobic010G245000--Sobic004G345700 Sobic010G245000--Sobic004G084300 Sobic005G154500 Sobic005G154500 Sobic010G245000--Sobic005G154500 Sobic010G245000--Sobic002G264200 Sobic010G245000--Sobic008G173100 Sobic003G241200 Sobic003G241200 Sobic010G245000--Sobic003G241200 Sobic010G245000--Sobic002G260400 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic002G157300 Sobic002G157300 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic006G173100--Sobic004G067700 Sobic006G173100--Sobic002G370900 Sobic003G187500--Sobic010G053800 Sobic003G187500--Sobic004G072100 Sobic003G187500--Sobic007G132100 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic003G187500--Sobic008G047800 Sobic004G039600 Sobic004G039600 Sobic003G187500--Sobic004G039600 Sobic006G012500 Sobic006G012500 Sobic003G187500--Sobic006G012500 Sobic003G187500--Sobic010G236400
Octagon: transcription factors


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