Gene annotation
Transcriptome id Sobic.007G218000.1
Synonym ATCLC-F, Sb07g028460, CLC-F, CLCF
Functional annotation chloride transporter, chloride channel family, putative, expressed
UniProt Q95951 , C5YJ94
Pfam PF00571 PF00654
Panther DB PTHR11689 PTHR11689:SF86
NCBI CDD KOG0475; Cl- channel CLC-3 and related proteins (CLC superfamily)
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT1G55620 : chloride channel F
RAP-DB (Rice) LOC_Os08g38980.1 : chloride transporter, chloride channel family, putative, expressed
MaizeGDB (Corn) Zm00025a021837 , Zm00025a033749 , Zm00025a005000 , Zm00025a033748
Brachypodium KQJ98827 , KQJ98826 , PNT69508 , KQK01558 , KQK01557
Barley HORVU7Hr1G049110.12 , HORVU7Hr1G049110.10 , HORVU7Hr1G049110.14 , HORVU7Hr1G049110.8 , HORVU7Hr1G049110.9 , HORVU7Hr1G049110.1 , HORVU7Hr1G049110.2 , HORVU7Hr1G049110.3 , HORVU7Hr1G049110.4 , HORVU7Hr1G049110.5 , HORVU7Hr1G049110.6 , HORVU7Hr1G049110.7
Wheat TraesCS6A02G283600 , TraesCS6A02G283600 , TraesCS6A02G283600 , TraesCS7D02G239700 , TraesCS7D02G239700 , TraesCS7D02G239700 , TraesCS7A02G240700 , TraesCS7A02G240700 , TraesCS6B02G312100 , TraesCS7B02G136300
Populus -


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cDNA sequences
Sobic.007G218000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G132100 myrosinase precursor, putative, expressed -
2 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
3 Sobic.002G112700 glutamine-dependent NAD, putative, expressed K01950: E6.3.5.1, NADSYN1, QNS1, NAD+ synthase (glutamine-hydrolysing)
4 Sobic.006G131000 expressed protein K11968: ariadne-1
5 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
6 Sobic.010G204400 phox domain-containing protein, putative, expressed -
7 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
8 Sobic.009G249700 expressed protein -
9 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
10 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
11 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
12 Sobic.001G114000 expressed protein -
13 Sobic.010G116600 FHA domain containing protein, putative, expressed -
14 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
15 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
16 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
17 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
18 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
19 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
20 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic007G218000 Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic004G039600 Sobic004G039600 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic007G132100--Sobic010G204400 Sobic004G072100--Sobic007G218000 Sobic010G053800 Sobic010G053800 Sobic004G072100--Sobic010G053800 Sobic010G275500 Sobic010G275500 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic010G069100 Sobic010G069100 Sobic004G072100--Sobic010G069100 Sobic010G116600 Sobic010G116600 Sobic004G072100--Sobic010G116600 Sobic008G047800 Sobic008G047800 Sobic004G072100--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic004G072100--Sobic001G155000 Sobic001G114000 Sobic001G114000 Sobic002G112700--Sobic001G114000 Sobic002G112700--Sobic007G218000 Sobic007G008900 Sobic007G008900 Sobic002G112700--Sobic007G008900 Sobic003G059750 Sobic003G059750 Sobic002G112700--Sobic003G059750 Sobic002G405800 Sobic002G405800 Sobic002G112700--Sobic002G405800 Sobic003G444800 Sobic003G444800 Sobic002G112700--Sobic003G444800 Sobic002G112700--Sobic004G072100 Sobic007G011300 Sobic007G011300 Sobic002G112700--Sobic007G011300 Sobic009G166300 Sobic009G166300 Sobic002G112700--Sobic009G166300 Sobic006G131000--Sobic007G218000 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic006G131000--Sobic004G178200 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic009G044800--Sobic010G116600 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic010G204400--Sobic006G163800 Sobic006G195700 Sobic006G195700 Sobic010G204400--Sobic006G195700 Sobic010G204400--Sobic007G218000 Sobic008G153000 Sobic008G153000 Sobic010G204400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic010G204400--Sobic010G236400 Sobic010G204400--Sobic007G132100 Sobic003G416700 Sobic003G416700 Sobic010G204400--Sobic003G416700 Sobic010G204400--Sobic006G131000 Sobic010G204400--Sobic010G116600 Sobic006G012500--Sobic004G039600 Sobic006G012500--Sobic010G053800 Sobic006G012500--Sobic008G099800 Sobic006G012500--Sobic010G275500 Sobic006G012500--Sobic004G072100 Sobic001G534800 Sobic001G534800 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic006G012500--Sobic007G132100 Sobic006G012500--Sobic007G218000 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic003G394200 Sobic003G394200 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic010G169900 Sobic010G169900 Sobic009G249700--Sobic010G169900 Sobic009G249700--Sobic003G444800 Sobic007G042900 Sobic007G042900 Sobic009G249700--Sobic007G042900 Sobic009G092400--Sobic007G218000 Sobic005G160400 Sobic005G160400 Sobic009G092400--Sobic005G160400 Sobic009G092400--Sobic009G044800 Sobic009G092400--Sobic009G249700 Sobic007G125000 Sobic007G125000 Sobic009G092400--Sobic007G125000 Sobic004G209700 Sobic004G209700 Sobic009G092400--Sobic004G209700 Sobic002G303600 Sobic002G303600 Sobic009G092400--Sobic002G303600 Sobic006G180000 Sobic006G180000 Sobic009G092400--Sobic006G180000 Sobic009G092400--Sobic007G132100
Octagon: transcription factors


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