Gene annotation
Transcriptome id Sobic.004G178200.1,Sobic.004G178200.2
Synonym Sb04g022800
Functional annotation ligatin, putative, expressed
UniProt A0A194YQB6 , A0A194YQE7
Pfam PF01253
Panther DB PTHR12217 PTHR12217:SF4
NCBI CDD KOG2522; Filamentous baseplate protein Ligatin, contains PUA domain
KEGG Orthology K15027; translation initiation factor 2D
Gene Ontology GO:0006413; translational initiation GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT1G71350 : eukaryotic translation initiation factor SUI1 family protein
RAP-DB (Rice) LOC_Os02g35160.1 : ligatin, putative, expressed
MaizeGDB (Corn) Zm00025a020689
Brachypodium KQJ99899 , KQJ99901 , KQJ99900
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G132100 myrosinase precursor, putative, expressed -
2 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
3 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
4 Sobic.006G131000 expressed protein K11968: ariadne-1
5 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
6 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
7 Sobic.010G116600 FHA domain containing protein, putative, expressed -
8 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
9 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
10 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
11 Sobic.003G195500 SEY1, putative, expressed -
12 Sobic.010G204400 phox domain-containing protein, putative, expressed -
13 Sobic.007G093800 expressed protein -
14 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
15 Sobic.001G281100 START domain containing protein, expressed -
16 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
17 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
18 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
19 Sobic.003G187200 phox domain-containing protein, putative, expressed -
20 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2


Gene co-expression network
sample Sobic004G178200 Sobic004G178200 Sobic007G132100 Sobic007G132100 Sobic004G178200--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic004G178200--Sobic007G218000 Sobic006G136400 Sobic006G136400 Sobic004G178200--Sobic006G136400 Sobic006G131000 Sobic006G131000 Sobic004G178200--Sobic006G131000 Sobic006G126100 Sobic006G126100 Sobic004G178200--Sobic006G126100 Sobic006G012500 Sobic006G012500 Sobic004G178200--Sobic006G012500 Sobic010G116600 Sobic010G116600 Sobic004G178200--Sobic010G116600 Sobic002G303600 Sobic002G303600 Sobic004G178200--Sobic002G303600 Sobic004G039600 Sobic004G039600 Sobic004G178200--Sobic004G039600 Sobic007G132100--Sobic007G218000 Sobic004G072100 Sobic004G072100 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic009G044800 Sobic009G044800 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic007G218000--Sobic007G132100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic007G218000--Sobic006G131000 Sobic007G218000--Sobic009G044800 Sobic007G218000--Sobic010G204400 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic006G136400--Sobic004G178200 Sobic006G208500 Sobic006G208500 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic006G136400--Sobic004G039600 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic006G131000--Sobic007G218000 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic006G131000--Sobic004G178200 Sobic004G004300 Sobic004G004300 Sobic006G126100--Sobic004G004300 Sobic006G126100--Sobic008G004600 Sobic006G126100--Sobic004G039600 Sobic001G534800 Sobic001G534800 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G126100--Sobic006G012500 Sobic004G135400 Sobic004G135400 Sobic006G126100--Sobic004G135400 Sobic006G126100--Sobic007G132100 Sobic006G126100--Sobic006G208500 Sobic006G012500--Sobic004G039600 Sobic010G053800 Sobic010G053800 Sobic006G012500--Sobic010G053800 Sobic006G012500--Sobic008G099800 Sobic006G012500--Sobic010G275500 Sobic006G012500--Sobic004G072100 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic006G012500--Sobic007G132100 Sobic006G012500--Sobic007G218000 Sobic002G071500 Sobic002G071500 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic003G093800 Sobic003G093800 Sobic010G116600--Sobic003G093800 Sobic010G116600--Sobic009G044800 Sobic010G116600--Sobic004G072100 Sobic010G236400 Sobic010G236400 Sobic010G116600--Sobic010G236400 Sobic010G116600--Sobic010G275500 Sobic003G408600 Sobic003G408600 Sobic010G116600--Sobic003G408600 Sobic010G116600--Sobic010G053800 Sobic010G261600 Sobic010G261600 Sobic002G303600--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic002G303600--Sobic004G323700 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500
Octagon: transcription factors


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