Gene annotation
Transcriptome id Sobic.006G136400.1
Synonym Sb06g021600, eIFiso4G1
Functional annotation eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed
UniProt C5YBI6
Pfam PF02847 PF02854
Panther DB PTHR23253 PTHR23253:SF32
NCBI CDD KOG0401; Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G)
KEGG Orthology K03260; translation initiation factor 4G
Gene Ontology GO:0005515; protein binding GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G57870 : MIF4G domain-containing protein / MA3 domain-containing protein
RAP-DB (Rice) LOC_Os04g42140.1 : eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed
MaizeGDB (Corn) Zm00025a056403 , Zm00025a050592 , Zm00025a050593 , Zm00025a050591 , Zm00025a010799
Brachypodium KQJ83387
Barley HORVU2Hr1G086240.8 , HORVU2Hr1G086240.9 , HORVU2Hr1G086240.4 , HORVU2Hr1G086240.5 , HORVU2Hr1G086240.6 , HORVU2Hr1G086240.7 , HORVU2Hr1G086240.1 , HORVU2Hr1G086240.2 , HORVU2Hr1G086240.3 , HORVU2Hr1G086240.10
Wheat TraesCS2D02G353600 , TraesCS2B02G373600 , TraesCS2A02G354900 , TraesCS2A02G354900 , TraesCS2A02G354900
Populus -


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cDNA sequences
Sobic.006G136400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
2 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
3 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
4 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
5 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
6 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
7 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
8 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
9 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
10 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
11 Sobic.004G135400 expressed protein -
12 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
13 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
14 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
15 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
16 Sobic.008G099800 expressed protein -
17 Sobic.009G084900 expressed protein -
18 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
19 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
20 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase


Gene co-expression network
sample Sobic006G136400 Sobic006G136400 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G208500 Sobic006G208500 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic004G039600 Sobic004G039600 Sobic006G136400--Sobic004G039600 Sobic006G126100 Sobic006G126100 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic008G004600--Sobic006G126100 Sobic008G004600--Sobic006G136400 Sobic004G135400 Sobic004G135400 Sobic008G004600--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic008G004600--Sobic005G003300 Sobic010G205800 Sobic010G205800 Sobic008G004600--Sobic010G205800 Sobic008G004600--Sobic006G208500 Sobic008G004600--Sobic004G039600 Sobic001G007000 Sobic001G007000 Sobic008G004600--Sobic001G007000 Sobic002G359400 Sobic002G359400 Sobic008G004600--Sobic002G359400 Sobic007G132100 Sobic007G132100 Sobic004G178200--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic004G178200--Sobic007G218000 Sobic004G178200--Sobic006G136400 Sobic006G131000 Sobic006G131000 Sobic004G178200--Sobic006G131000 Sobic004G178200--Sobic006G126100 Sobic006G012500 Sobic006G012500 Sobic004G178200--Sobic006G012500 Sobic010G116600 Sobic010G116600 Sobic004G178200--Sobic010G116600 Sobic002G303600 Sobic002G303600 Sobic004G178200--Sobic002G303600 Sobic004G178200--Sobic004G039600 Sobic006G208500--Sobic004G135400 Sobic003G006400 Sobic003G006400 Sobic006G208500--Sobic003G006400 Sobic006G208500--Sobic006G136400 Sobic009G245800 Sobic009G245800 Sobic006G208500--Sobic009G245800 Sobic006G208500--Sobic006G126100 Sobic006G208500--Sobic004G039600 Sobic006G200700 Sobic006G200700 Sobic006G208500--Sobic006G200700 Sobic001G369000 Sobic001G369000 Sobic006G208500--Sobic001G369000 Sobic004G277200 Sobic004G277200 Sobic006G208500--Sobic004G277200 Sobic002G133300 Sobic002G133300 Sobic004G131300--Sobic002G133300 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic009G084900 Sobic009G084900 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic010G059500 Sobic010G059500 Sobic004G131300--Sobic010G059500 Sobic007G054800 Sobic007G054800 Sobic004G131300--Sobic007G054800 Sobic004G131300--Sobic006G136400 Sobic002G256700 Sobic002G256700 Sobic004G131300--Sobic002G256700 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic004G004300 Sobic004G004300 Sobic006G126100--Sobic004G004300 Sobic006G126100--Sobic008G004600 Sobic006G126100--Sobic004G039600 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G126100--Sobic006G012500 Sobic006G126100--Sobic004G135400 Sobic006G126100--Sobic007G132100 Sobic006G126100--Sobic006G208500 Sobic002G008800 Sobic002G008800 Sobic002G262900--Sobic002G008800 Sobic004G275700 Sobic004G275700 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic002G262900--Sobic006G136400 Sobic002G262900--Sobic004G039600 Sobic002G262900--Sobic010G205800 Sobic010G261600 Sobic010G261600 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic001G124200 Sobic001G124200 Sobic002G262900--Sobic001G124200 Sobic001G447300--Sobic006G136400 Sobic008G055900 Sobic008G055900 Sobic001G447300--Sobic008G055900 Sobic001G447300--Sobic008G099800 Sobic006G166200 Sobic006G166200 Sobic001G447300--Sobic006G166200 Sobic001G455800 Sobic001G455800 Sobic001G447300--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic001G447300--Sobic004G145000 Sobic002G371700 Sobic002G371700 Sobic001G447300--Sobic002G371700 Sobic004G053500 Sobic004G053500 Sobic001G447300--Sobic004G053500 Sobic004G353000 Sobic004G353000 Sobic001G447300--Sobic004G353000 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600
Octagon: transcription factors


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