Gene annotation
Transcriptome id Sobic.008G055900.1
Synonym Sb08g004730, TMN1, AtTMN1
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt C5YSS4
Pfam PF02990
Panther DB PTHR10766 PTHR10766:SF48
NCBI CDD -
KEGG Orthology K17087; transmembrane 9 superfamily member 3
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G10950 : transmembrane nine 1
RAP-DB (Rice) LOC_Os12g07670.1 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a025714 , Zm00025a020630 , Zm00025a054058
Brachypodium KQJ89178 , KQJ92024
Barley HORVU0Hr1G010920.6 , HORVU0Hr1G010920.2 , HORVU0Hr1G010920.3 , HORVU0Hr1G010920.4 , HORVU5Hr1G036940.7 , HORVU5Hr1G036940.6 , HORVU5Hr1G036940.5 , HORVU5Hr1G036940.4 , HORVU5Hr1G036940.3 , HORVU5Hr1G036940.2 , HORVU5Hr1G036940.1 , HORVU0Hr1G010920.1 , HORVU0Hr1G010920.5 , HORVU4Hr1G018330.5 , HORVU4Hr1G018330.4 , HORVU4Hr1G018330.7 , HORVU4Hr1G018330.6 , HORVU4Hr1G018330.1 , HORVU4Hr1G018330.3 , HORVU4Hr1G018330.2
Wheat TraesCS4B02G096600 , TraesCS5D02G128300 , TraesCS5A02G111400 , TraesCS5A02G111400 , TraesCS5B02G119400 , TraesCS5B02G119400 , TraesCS4A02G217900 , TraesCS5D02G128300
Populus PNT42539 , PNT42541 , PNT42540


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cDNA sequences
Sobic.008G055900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
2 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
3 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
4 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
5 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
6 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
7 Sobic.008G085700 exocyst complex component 5, putative, expressed -
8 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
9 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
10 Sobic.001G023100 ACBP4, putative, expressed -
11 Sobic.009G077600 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
12 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
13 Sobic.005G110499 - K14006: protein transport protein SEC23
14 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
15 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
16 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
17 Sobic.001G382600 expressed protein -
18 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
19 Sobic.006G103200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
20 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3


Gene co-expression network
sample Sobic008G055900 Sobic008G055900 Sobic002G020700 Sobic002G020700 Sobic008G055900--Sobic002G020700 Sobic010G223300 Sobic010G223300 Sobic008G055900--Sobic010G223300 Sobic008G103300 Sobic008G103300 Sobic008G055900--Sobic008G103300 Sobic010G020400 Sobic010G020400 Sobic008G055900--Sobic010G020400 Sobic006G136400 Sobic006G136400 Sobic008G055900--Sobic006G136400 Sobic001G447300 Sobic001G447300 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic002G020700--Sobic010G020400 Sobic002G020700--Sobic008G085700 Sobic002G020700--Sobic008G055900 Sobic001G333100 Sobic001G333100 Sobic002G020700--Sobic001G333100 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic010G223300--Sobic008G055900 Sobic010G223300--Sobic001G449900 Sobic010G223300--Sobic002G020700 Sobic003G338500 Sobic003G338500 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic006G180000 Sobic006G180000 Sobic010G223300--Sobic006G180000 Sobic008G103300--Sobic008G055900 Sobic002G371700 Sobic002G371700 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic010G020400--Sobic002G008800 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G208500 Sobic006G208500 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic006G136400--Sobic004G039600 Sobic006G126100 Sobic006G126100 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic001G447300--Sobic006G136400 Sobic001G447300--Sobic008G055900 Sobic008G099800 Sobic008G099800 Sobic001G447300--Sobic008G099800 Sobic006G166200 Sobic006G166200 Sobic001G447300--Sobic006G166200 Sobic001G455800 Sobic001G455800 Sobic001G447300--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic001G447300--Sobic004G145000 Sobic001G447300--Sobic002G371700 Sobic004G053500 Sobic004G053500 Sobic001G447300--Sobic004G053500 Sobic004G353000 Sobic004G353000 Sobic001G447300--Sobic004G353000 Sobic008G085700--Sobic002G020700 Sobic008G085700--Sobic001G449900 Sobic002G070600 Sobic002G070600 Sobic008G085700--Sobic002G070600 Sobic008G085700--Sobic010G020400 Sobic008G085700--Sobic008G055900 Sobic005G110499 Sobic005G110499 Sobic008G085700--Sobic005G110499 Sobic008G085700--Sobic001G049400 Sobic001G161700 Sobic001G161700 Sobic008G085700--Sobic001G161700 Sobic010G192600 Sobic010G192600 Sobic008G085700--Sobic010G192600 Sobic006G056200--Sobic004G039600 Sobic006G056200--Sobic008G055900 Sobic006G056200--Sobic008G129600 Sobic003G099300 Sobic003G099300 Sobic006G056200--Sobic003G099300 Sobic009G226400 Sobic009G226400 Sobic006G056200--Sobic009G226400 Sobic006G056200--Sobic008G103300 Sobic001G369000 Sobic001G369000 Sobic006G056200--Sobic001G369000 SobicK004100 SobicK004100 Sobic006G056200--SobicK004100 Sobic002G029300 Sobic002G029300 Sobic006G056200--Sobic002G029300 Sobic008G129600--Sobic008G055900 Sobic007G177300 Sobic007G177300 Sobic008G129600--Sobic007G177300 Sobic008G129600--Sobic006G056200 Sobic008G129600--Sobic008G103300 Sobic010G264000 Sobic010G264000 Sobic008G129600--Sobic010G264000 Sobic001G467100 Sobic001G467100 Sobic008G129600--Sobic001G467100 Sobic008G129600--Sobic001G449900 Sobic003G182300 Sobic003G182300 Sobic008G129600--Sobic003G182300 Sobic006G270600 Sobic006G270600 Sobic008G129600--Sobic006G270600
Octagon: transcription factors


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